Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D16
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    53   2e-07
04_01_0196 + 2287911-2288278,2289187-2289838                           31   1.1  

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%)
 Frame = +1

Query: 232 YVCLLDRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKW 411
           Y  +  R+ L+IT +EF++ P+D+++Q ++ L   MW  L V      +   +E N I  
Sbjct: 20  YATIQYRAVLKITEEEFSSPPMDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIV- 78

Query: 412 ETQNNLPSFYIFNHRGKALSYD 477
               NL  F IFNHRG+AL  D
Sbjct: 79  SLPANL-DFMIFNHRGRALPSD 99


>04_01_0196 + 2287911-2288278,2289187-2289838
          Length = 339

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 266 SRHKSLPRYH-WILSSKLWSVCLLSCGEC-*MWRVIFAKYQLLLN 394
           +RHK+L +++ W +    W++    CG C  M + +F  Y+L+ N
Sbjct: 58  ARHKNLLKFYGWCIRGHSWNILHFMCGWCWSMEKELFLVYELMNN 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,998,198
Number of Sequences: 37544
Number of extensions: 276783
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)