Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D15
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    52   1e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      46   4e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    41   2e-04
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    40   5e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    33   0.041
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   4.7  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   8.3  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 470 CPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLD--STNCCEGSDKDIYCKVC 628
           C +C   V +  Q+   G+ WH +CFKC +C K+LD  S +  +   K I+CK+C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 149 CPXCGKSVXAAXXRVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 304
           C  C +SV +      GG  WH  CFKC  C K LD ++     + + +++CK+C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +2

Query: 137 SHPXCPXCGKSVXAAXXRVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARK 316
           S   C  CG S+ A     A G K H  CFKC  C + L+       EG+ YC + +  +
Sbjct: 254 SEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQ 313

Query: 317 F 319
           F
Sbjct: 314 F 314



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 464 EGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLD 577
           + C  CGG + A   + A G+  H +CFKC  C + L+
Sbjct: 256 KSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLE 293



 Score = 32.7 bits (71), Expect = 0.055
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 149 CPXCGKSVXAAXXRVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 310
           C  C K +     + + G ++H  C+ CG C  LL        E    C+ C A
Sbjct: 378 CKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 437 RSIAKAPPGEG---CPRCGGYVYAAEQMLA-RGRAWHKECFKCGDCMKRLDSTN--CCEG 598
           +SI+K+P  +G   C RCG      E  ++  G  WHK+CF C  C K L+ ++    + 
Sbjct: 5   KSISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQT 64

Query: 599 SDKDIYCKVC 628
           SD    C  C
Sbjct: 65  SDGRPVCSSC 74



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 527 AWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 628
           ++H+ECF+C DC K++  +N  +  ++ I+C  C
Sbjct: 96  SYHRECFRCHDCRKQIIDSN-FKRDNRTIFCNDC 128



 Score = 33.1 bits (72), Expect = 0.041
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 143 PXCPXCGKSVXAAXXRV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 304
           P C  C  +  A   R+      +G   +H+ CF+C  C+K +  +N       ++C  C
Sbjct: 69  PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128



 Score = 32.7 bits (71), Expect = 0.055
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 149 CPXCGKSVXAAXXRVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 304
           C  CG++       ++ GG  WHK CF C  C K L+ ++       +G   C  C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 383 LKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDC 562
           L  E    ++ +   + P+++ K    + C  CG  V + + + A G  +H ECF+C DC
Sbjct: 87  LNKEEQQSLKRSDTSVFPKAVRKVSSSKICASCG-QVISGQYVRALGNIYHLECFRCHDC 145


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +2

Query: 122 LSNPLSHPXCPXCGKSVXAAXXRVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYC 295
           +S    H  C  CG    A    ++    W K C  CGL   +  +  CSE    G   C
Sbjct: 98  ISKDCPHVLCTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVC 151

Query: 296 KVCH 307
           + CH
Sbjct: 152 RTCH 155


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 307
           K+H  C  CG C+   +S    E+   ++CK C+
Sbjct: 65  KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 258 ESSNFWHRPHLKHILCHLRPP 196
           E+SN++  P L+H LCH  PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +2

Query: 356 CLSMDTG----DHLK--GENAGGVRTNGACLEPRSI 445
           C SMD G    D LK  GEN   +  +G C  P+SI
Sbjct: 258 CTSMDRGKMSDDFLKLDGENGNQLFISGDCYRPQSI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,026
Number of Sequences: 5004
Number of extensions: 42998
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)