Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D12
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    96   6e-21
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    28   1.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   9.0  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 63/199 (31%), Positives = 98/199 (49%), Gaps = 5/199 (2%)
 Frame = +2

Query: 161 NPNXRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHXHKSEYLYPSPGKPLDV 340
           NP   Y +     ++ VL  +  F N+HL     N +AV+  H  K EYLYPS      V
Sbjct: 33  NPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKV 92

Query: 341 RQID-----GQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRR 505
            ++D       Y  F  V+  +   +  L+ S  +  +  ++           +I + + 
Sbjct: 93  AEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSR--KTMISGALSRALAYINQVQN 150

Query: 506 SAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLSLLQQGCDI 685
                LR  SRIL+ + + D A QYI  MN  F AQK+ + I+VC+++     L+Q  D 
Sbjct: 151 KNT--LR--SRILIFSLTGDVALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADA 206

Query: 686 TGGLYLKIPSLEGLLQYLL 742
           TGG+YLK+ + +GLLQYL+
Sbjct: 207 TGGIYLKVDNPKGLLQYLM 225


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 515 PGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSVDKHLSLLQQGCDITGG 694
           P     +R   VT S D A      +N +    KE  LID+    + +S L++  D+   
Sbjct: 229 PAPEEETRKADVTNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPT 288

Query: 695 LYL 703
           LY+
Sbjct: 289 LYI 291


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -3

Query: 282 PITASSLLAFCIKWELLNATTASKTFVSILGSSIMYL*LG---LVSTITTRRLLSEGTSS 112
           PI +SS L       L N T +S +  ++  SS +   +    L++  ++  LLS  TSS
Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSS 757

Query: 111 SAIAN 97
           SAI +
Sbjct: 758 SAIVS 762


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 688 RDVATLLQQTQVFVHRAHVDQDLLLLCGEEHVHVVDVL 575
           RD+  LL++T   +       + L++CG+ H    D+L
Sbjct: 189 RDLKELLEKTPSLIDIPVKGDETLVICGDTHGQYFDLL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,960
Number of Sequences: 5004
Number of extensions: 60327
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)