Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D11
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   206   2e-54
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.63 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    29   1.1  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.9  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   5.9  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   7.8  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  206 bits (504), Expect = 2e-54
 Identities = 116/240 (48%), Positives = 146/240 (60%), Gaps = 3/240 (1%)
 Frame = +3

Query: 141 SCRFXXXXXXXXXXXXXXXVXSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIR 320
           SCR                V  I EMGAYV LLEY+NIEGM               K IR
Sbjct: 5   SCRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIR 64

Query: 321 VGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETS 500
           VG+ E VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + +
Sbjct: 65  VGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHN 120

Query: 501 EQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV---LLANIKR 671
             LE +Y    W     Y+K   AYD FK A  +P  + E GL+     V   LLA I R
Sbjct: 121 VPLETMYTTIGW---PLYRKYGHAYDAFKLAISNPDHVFE-GLEPPKSGVINDLLAQISR 176

Query: 672 KLTSQAVKIRADIECACYGYEGIDAVRXALKAGLXLSTVDMPIKINLIAPPWYVMTTSXL 851
           +LT Q +KIRAD+E  C+GYEGI+A++ ALKA   + T ++PIK+ L+APP YV+ T+ L
Sbjct: 177 RLTPQPIKIRADVEVTCFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVLLTNAL 236


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 528 TAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV 650
           T +YFE  +     A D F Q  +DP  L+EC  D E + V
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC-KDREIRAV 146


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
 Frame = +3

Query: 318 RVGKTEPVVVIRVDKEKGYIDLS-KRRVSAEDIYKCTERYAKAKAV-NSILRHVAELLHY 491
           R+ + E + V   + EK Y +   + ++S+  I +  ++ A+   + N +L+   E  H+
Sbjct: 356 RISELE-MAVKEYESEKSYSEKEYEEKISSLRI-ELEDKLAEIDMLRNKLLKE--EHKHH 411

Query: 492 ETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLLANIKR 671
            TSE+LEEL K  A   +++     +A +   QA +    L+    D   K +    I+R
Sbjct: 412 STSEKLEELSKYVASIQDKERNNGQNALEL--QARIQQ--LERRNEDMYNKLLAEEIIRR 467

Query: 672 KLTSQAVKIRADIECAC 722
           KL +   +++ +I   C
Sbjct: 468 KLHNDIQELKGNIRVFC 484


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 460 SCDM*QSSSIMKLLSNWKNFIKKQLGTLKRNIRRKPRHMTSS 585
           +C M  + +  KLL+ ++N + +QL  L+   +  P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 504 QLEELYKKTAWYFEEKYKKKA-SAYDF 581
           Q+EEL  KT WY+  + +K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 348  IRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKK 527
            I  ++E  +  L   R+ A+ +  C        A   I+++  E +    S +LE L K 
Sbjct: 796  IEAERESMHQMLETFRIKADVVVLCLAAM-NLDAYRYIVKN--EHVRPSKSSELENLLKD 852

Query: 528  TAWYFEEKYKKKASAYD 578
             +W+ EEK K++ +  D
Sbjct: 853  DSWWQEEK-KRRGNTVD 868


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 330 TEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQL 509
           TEP+V ++   E+  +     R S   +    E + KAK        + +  H ETS+ +
Sbjct: 606 TEPLVGLKTASEED-LPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM 664

Query: 510 EELYKKTAWY 539
           E+ Y+    Y
Sbjct: 665 EQHYRAVTQY 674


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +3

Query: 402 AEDIYKCTERYAKA----KAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYKKKAS 569
           A+  YK T R  K     +A N +   +  L +     + E+  +K   Y +E +     
Sbjct: 30  AQVSYKYTNRSPKMALNQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESF----- 84

Query: 570 AYDFFKQAAVDPSVLDECGLDEETKDV 650
            Y+F  +   DP        D ETKD+
Sbjct: 85  -YEFMHEFEFDPENSISLNYDSETKDL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,764
Number of Sequences: 5004
Number of extensions: 54499
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)