Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D11
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   182   2e-46
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   177   7e-45
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    30   2.0  

>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  182 bits (444), Expect = 2e-46
 Identities = 105/258 (40%), Positives = 145/258 (56%), Gaps = 20/258 (7%)
 Frame = +3

Query: 138 LSCRFXXXXXXXXXXXXXXXVXSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 317
           L CR                V  IA+MGAYV LLEYNNIEGM              + LI
Sbjct: 4   LECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLI 63

Query: 318 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 497
           +VG+ EP +V+RVD++KGYIDLSKRRVS E+ + C +RY K+K V+SI+RHVAE L  + 
Sbjct: 64  KVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLGID- 122

Query: 498 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVLD-------ECGLD------- 632
              LE LY++  W     Y+K   A++ FK    DP ++LD       E G D       
Sbjct: 123 ---LEPLYQRIGWPL---YRKYGHAFEAFKLIVADPDAILDSLTYEEKETGADGQEVTKV 176

Query: 633 -----EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRXALKAGLXLSTVDMP 797
                 E KD L+ NI+R++T Q +KIRAD+E  C+ ++G+  ++ A++        + P
Sbjct: 177 VPAVTPEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKQAMRKAEAAGNDNCP 236

Query: 798 IKINLIAPPWYVMTTSXL 851
           +KI L+APP YV+TT  L
Sbjct: 237 VKIKLVAPPLYVLTTQTL 254


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  177 bits (432), Expect = 7e-45
 Identities = 107/259 (41%), Positives = 141/259 (54%), Gaps = 21/259 (8%)
 Frame = +3

Query: 138 LSCRFXXXXXXXXXXXXXXXVXSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 317
           L CR                V  +AE+GAYV LLEYNNIEGM                LI
Sbjct: 4   LECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIPSLI 63

Query: 318 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 497
           +VG+ EP VV+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH + 
Sbjct: 64  KVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLHLD- 122

Query: 498 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP--SVLD-------ECGLDE----- 635
              LE LY + AW     Y+    A+D FK    DP  ++LD       E G D+     
Sbjct: 123 ---LEPLYHRIAW---PLYRTYGHAFDAFKLIVADPDAAILDSLTYDLTETGPDDQEVTK 176

Query: 636 -------ETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRXALKAGLXLSTVDM 794
                  E KD L+ NI+R++T Q  KIRADI+  C+ Y+G+  ++ A++        D 
Sbjct: 177 TLPAVTPEIKDALIKNIRRRMTPQPHKIRADIDMKCFQYDGVLHIQEAMRKAEAAGNKDC 236

Query: 795 PIKINLIAPPWYVMTTSXL 851
           P+KI L+A P YV+TT  L
Sbjct: 237 PVKIKLVAAPLYVLTTETL 255


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 8/20 (40%), Positives = 18/20 (90%)
 Frame = +3

Query: 531 AWYFEEKYKKKASAYDFFKQ 590
           AWY++E+Y+K+A  +D++++
Sbjct: 19  AWYWDERYRKEAGPFDWYQK 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,152
Number of Sequences: 37544
Number of extensions: 341855
Number of successful extensions: 728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)