Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D10
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0243 - 16791789-16793306                                         31   0.68 
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841           29   3.6  
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940...    28   6.3  
07_03_0072 - 13051145-13052362                                         27   8.3  

>02_03_0243 - 16791789-16793306
          Length = 505

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 87  TALL-ACTAAAPGLLLHETPVVAAVHTPVIHTVPIVAAKTTVTKSSQVVNHGS 242
           T LL AC A APG+ +H      A  T  +HT   + A    T    V++  S
Sbjct: 159 TVLLPACRALAPGVTVHHAACDGASSTHFLHTWAAICAGAAATPPPPVIDRTS 211


>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
          Length = 348

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 492 F*KINDEQRSGAKS*RWECGGAPRRNCERWQRGRSSQLQ 376
           F  + D  R   +  R E  G  R + E W RGR S LQ
Sbjct: 91  FATLPDASREKGEKQRLEAEGEGRWSVEHWSRGRRSDLQ 129


>04_04_1570 -
           34492944-34493159,34493668-34493842,34493964-34494068,
           34494454-34494623,34494760-34494830,34494950-34496799,
           34497003-34497052,34497147-34497263
          Length = 917

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 317 GCGMDHVCGMNHG 279
           GC ++H+CG+ HG
Sbjct: 407 GCNVEHICGVEHG 419


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 247 WYIPPLWSMPHPWFMPHTWSMPH 315
           W+  P W M H WF    W+M H
Sbjct: 367 WF--PRWPMNHRWFFLMFWAMNH 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,992
Number of Sequences: 37544
Number of extensions: 279826
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)