Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D08
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1374 + 26117560-26117672,26117761-26117831,26118389-261184...    83   7e-17
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181...    81   3e-16
06_01_0406 + 2899807-2900133                                           69   2e-12
06_03_1410 + 29977309-29977450,29978373-29978551,29979139-299792...    27   9.1  

>07_03_1374 +
           26117560-26117672,26117761-26117831,26118389-26118410,
           26118510-26118573
          Length = 89

 Score = 83.4 bits (197), Expect = 7e-17
 Identities = 31/65 (47%), Positives = 42/65 (64%)
 Frame = +1

Query: 118 EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDA 297
           + LD  F+CPFCNH  S E ++D         CR+C E+F TT N L+EPID+Y++W+D 
Sbjct: 17  DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDE 76

Query: 298 CESAN 312
           CE  N
Sbjct: 77  CERVN 81


>02_01_0272 -
           1816791-1816902,1817002-1817023,1817771-1817841,
           1817951-1818063
          Length = 105

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 31/65 (47%), Positives = 41/65 (63%)
 Frame = +1

Query: 118 EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDA 297
           + LD  F CPFCNH  S E ++D         CR+CLE F T+ N L+EPID+Y++W+D 
Sbjct: 17  DKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDE 76

Query: 298 CESAN 312
           CE  N
Sbjct: 77  CERVN 81


>06_01_0406 + 2899807-2900133
          Length = 108

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 112 ATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWV 291
           A   L+  F+CPFC+H  + E  +D     A   C VC   + TT + L+EPIDVY++W+
Sbjct: 18  AAPKLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWI 77

Query: 292 DACESA 309
           D CE A
Sbjct: 78  DQCELA 83


>06_03_1410 +
           29977309-29977450,29978373-29978551,29979139-29979222,
           29979338-29979508,29979746-29979868
          Length = 232

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 214 CRVCLEDFQTTTNVLSEP 267
           C VCL+DFQT   V S P
Sbjct: 187 CSVCLQDFQTGEKVRSLP 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,854,868
Number of Sequences: 37544
Number of extensions: 127540
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)