Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_D06
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 108 5e-24
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 108 5e-24
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 101 6e-22
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 101 6e-22
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 93 2e-19
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 93 2e-19
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 93 2e-19
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 93 2e-19
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 36 0.026
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 33 0.18
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 33 0.18
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 33 0.18
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 33 0.18
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 32 0.55
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 32 0.55
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 32 0.55
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 30 2.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 2.2
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 30 2.2
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 30 2.2
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 30 2.2
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 30 2.2
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 30 2.2
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 30 2.2
Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical pr... 28 8.9
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 108 bits (259), Expect = 5e-24
Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 327 XXXCGKPKNIDDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL 506
++D NE L+ + E +R+ E + +D+ + VR++D+EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 507 RGKFVKPTLKKVSKYENKFAKLQKK-AAEFNFRNQLKVVKKKEFTL 641
RGKFVKPTLKKVSK E KF KL+KK A + +FR QLKVV K EF L
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFAL 179
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 108 bits (259), Expect = 5e-24
Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 327 XXXCGKPKNIDDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL 506
++D NE L+ + E +R+ E + +D+ + VR++D+EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 507 RGKFVKPTLKKVSKYENKFAKLQKK-AAEFNFRNQLKVVKKKEFTL 641
RGKFVKPTLKKVSK E KF KL+KK A + +FR QLKVV K EF L
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFAL 179
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 101 bits (242), Expect = 6e-22
Identities = 60/160 (37%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Frame = +3
Query: 153 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 332
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 333 XCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLR 509
++D N+ L +I ++ + R+ E +K+D+ V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 510 GKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKK 629
GKFVKPTLKKVSKY+NKF + + NFRN LKVVKK+
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE 190
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 101 bits (242), Expect = 6e-22
Identities = 60/160 (37%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Frame = +3
Query: 153 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 332
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 333 XCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLR 509
++D N+ L +I ++ + R+ E +K+D+ V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 510 GKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKK 629
GKFVKPTLKKVSKY+NKF + + NFRN LKVVKK+
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE 190
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 93.1 bits (221), Expect = 2e-19
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 327 XXXCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVND 503
N+D ++ A L+ I + + R+ E +K+D+ H + + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 504 LRGKFVKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKK 629
LRGKFVKP+LKKVSKY+NKF K+ +K+ N RN LK VKK+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKE 193
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 93.1 bits (221), Expect = 2e-19
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 327 XXXCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVND 503
N+D ++ L++I + + R+ E +K+D+ + V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 504 LRGKFVKPTLKKVSKYENKFAKL--QKKAAEFNFRNQLKVVKK 626
LRGKFVKP+LKKVSKY+NKF K K + +FR LK+VKK
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKK 179
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 93.1 bits (221), Expect = 2e-19
Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 327 XXXCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVND 503
N+D ++ A L+ I + + R+ E +K+D+ H + + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 504 LRGKFVKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKK 629
LRGKFVKP+LKKVSKY+NKF K+ +K+ N RN LK VKK+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKE 193
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 93.1 bits (221), Expect = 2e-19
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Frame = +3
Query: 147 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 326
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 327 XXXCGKPKNIDDANE-AMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVND 503
N+D ++ L++I + + R+ E +K+D+ + V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 504 LRGKFVKPTLKKVSKYENKFAKL--QKKAAEFNFRNQLKVVKK 626
LRGKFVKP+LKKVSKY+NKF K K + +FR LK+VKK
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKK 179
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 36.3 bits (80), Expect = 0.026
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +3
Query: 351 NIDDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNS---QV--NDLRGK 515
N + ++ LK I+E + R+ E +K+DLE +++Y++ +LN QV N K
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNERQRQVTRNSALKK 1102
Query: 516 FVKPTLKKVSKYENK---FAKLQKKAAEFNFRNQLKVVKKK 629
+ P ++Y K +K ++ NFR + V K+
Sbjct: 1103 GIDPAEVGNTRYPAKVQIVSKYDRQVDRRNFRERRSVFDKR 1143
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL-RGKFVKPTL 533
LK I+ + R+ EG+K+DLE +++Y++ +LN + + R K +K L
Sbjct: 137 LKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKALKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL-RGKFVKPTL 533
LK I+ + R+ EG+K+DLE +++Y++ +LN + + R K +K L
Sbjct: 241 LKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKALKKGL 293
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 GKPKNIDDANEAM---LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQ 494
G K+I +A+ + +K I+E + R+ E QK+DLE +++Y++ +LN +
Sbjct: 200 GIRKSIAEASTILPNDMKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 GKPKNIDDANEAM---LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQ 494
G K+I +A+ + +K I+E + R+ E QK+DLE +++Y++ +LN +
Sbjct: 200 GIRKSIAEASTILPNDMKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYEN 557
+++ + + DR+ E + DLE + RK E+ +L + + G K +K +K EN
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAK-EN 980
Query: 558 KFAKLQ 575
+ LQ
Sbjct: 981 QIHSLQ 986
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYEN 557
+++ + + DR+ E + DLE + RK E+ +L + + G K +K +K EN
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAK-EN 980
Query: 558 KFAKLQ 575
+ LQ
Sbjct: 981 QIHSLQ 986
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYEN 557
+++ + + DR+ E + DLE + RK E+ +L + + G K +K +K EN
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEKAAK-EN 980
Query: 558 KFAKLQ 575
+ LQ
Sbjct: 981 QIHSLQ 986
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDY-EISDLNSQV 497
LK+ + +YV E +++D + E+ +DY EISDLN Q+
Sbjct: 460 LKQAVGILQSEIYVEEQKQYDKQFELLHQDYQEISDLNDQL 500
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +3
Query: 369 EAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKK--V 542
E +L++ I+E ++ G+K EH ++ +L S+ +L K +K + + +
Sbjct: 288 EQLLEKRIEELEMKLTEPNGEKLQFEH-------QLEELKSRCEELTDKALKVDVMQHSI 340
Query: 543 SKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTL 641
YE KF +LQ+ E + QL+ K+ TL
Sbjct: 341 EDYEKKFVELQEMKEEAD--EQLQKAKEDIETL 371
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 453 VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENK 560
+ +++ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 436 LEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 470
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 453 VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENK 560
+ +++ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 438 LEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 405 DRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQK-- 578
+R E + ++ EVR + D+N++V++L+ + +K ++ E++F ++K
Sbjct: 1912 NRKQQLENELLNVRSEVRDYKQRVHDVNNRVSELQRQLQDANTEK-NRVEDRFLSVEKVV 1970
Query: 579 ---KAAEFNFRNQLKVVKKKE 632
+ E + R QL+ K ++
Sbjct: 1971 NTMRTTETDLRQQLETAKNEK 1991
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 405 DRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQK-- 578
+R E + ++ EVR + D+N++V++L+ + +K ++ E++F ++K
Sbjct: 1985 NRKQQLENELLNVRSEVRDYKQRVHDVNNRVSELQRQLQDANTEK-NRVEDRFLSVEKVV 2043
Query: 579 ---KAAEFNFRNQLKVVKKKE 632
+ E + R QL+ K ++
Sbjct: 2044 NTMRTTETDLRQQLETAKNEK 2064
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +3
Query: 405 DRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQK-- 578
+R E + ++ EVR + D+N++V++L+ + +K ++ E++F ++K
Sbjct: 1985 NRKQQLENELLNVRSEVRDYKQRVHDVNNRVSELQRQLQDANTEK-NRVEDRFLSVEKVV 2043
Query: 579 ---KAAEFNFRNQLKVVKKKE 632
+ E + R QL+ K ++
Sbjct: 2044 NTMRTTETDLRQQLETAKNEK 2064
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 507 RGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTL 641
RGKFV+P + ++ K+ K KL+K + KV+K+KE L
Sbjct: 649 RGKFVRPLMPRIPKFVAKKKKLKKVDGK-------KVLKRKEIVL 686
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNS-QVNDLRGKFVKPTL 533
LK I+ + R+ E +K+DLE ++DY++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 378 LKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNS-QVNDLRGKFVKPTL 533
LK I+ + R+ E +K+DLE ++DY++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +3
Query: 453 VRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENK 560
+ +++ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 438 LEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical
protein W01B6.3 protein.
Length = 484
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 634 NSFFFTTFNWLRKLNSAAFFWSLANLFSYLETFF 533
+ F F +F L SAA F S+A++FS L T+F
Sbjct: 183 DGFIFGSFV-LNMYTSAAVFMSIASIFSILLTYF 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,430
Number of Sequences: 27780
Number of extensions: 221327
Number of successful extensions: 776
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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