Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D04
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.49 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   8.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   8.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 811 HLTQIRHPWAFSVXNDLTQYYMTISW 734
           HL Q        V  DLT YY+++ W
Sbjct: 177 HLAQTEDSNQIEVGIDLTDYYISVEW 202


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 811 HLTQIRHPWAFSVXNDLTQYYMTISW 734
           H+ +IR      +  DL+++Y ++ W
Sbjct: 181 HIDEIRGKNVVDIGVDLSEFYTSVEW 206


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 445 LVCYSRQTCDHHAEGYSTCSTNP 513
           L+   R + D     +STCS++P
Sbjct: 102 LMAILRMSADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 445 LVCYSRQTCDHHAEGYSTCSTNP 513
           L+   R + D     +STCS++P
Sbjct: 101 LMAILRMSADGGCRNFSTCSSHP 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,028
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)