Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D03
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.57 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.99 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.0  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
 Frame = +1

Query: 94  GLSSITRTCGRARAQ-PGGAGLASASKKDLTTQN--DPFQRLFYSNDEK*LKKRQTYPSV 264
           GL++     GR     P    L      DL T+   +P+ R+F S  E  L  R     +
Sbjct: 406 GLNAGLSALGREPVDIPRNTALLGVMVDDLITKGVKEPY-RVFTSRSEYRLTTRADNADL 464

Query: 265 SFTPAPFSTSLFGLKTLFDVFQKTHFLGSISTILKMRFL 381
             TP   S  L   +T ++ FQ+T  L   S  +   F+
Sbjct: 465 RLTPLAQSIGLLDDQTHWESFQRTKSLLDFSNKIAKEFI 503


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 190 NDPFQRLFYSNDEK*LKKRQTYP-SVSFTPA 279
           +DPFQRLF +       K +++P SV+++P+
Sbjct: 82  HDPFQRLFKAKGNASFSKTKSFPSSVTYSPS 112


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 446  KSRIFTSHRNNSNNSQVYLYKLRNRIFRIVEIEPKKCVFWKTSNKVFKPNR 294
            KS I+ S +NNS  S+V    L   +F I    PK  + W  +   F P R
Sbjct: 1007 KSFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPPKSYLSWSVT---FDPQR 1054


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -1

Query: 416  NSNNSQVYLYKLRNRIFRIVEIEPKKCVFWKTSNKVFKPNR 294
            N N S+++ ++   RI ++++  P     W T  K+ +P++
Sbjct: 2114 NKNQSRIFCFREPIRISKLLQNFPALLSKWSTPTKLVEPSQ 2154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,151
Number of Sequences: 5004
Number of extensions: 33074
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)