Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D03
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00042-3|AAM97940.1|  175|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    27   8.3  

>U00042-3|AAM97940.1|  175|Caenorhabditis elegans Hypothetical
           protein T04A6.1a protein.
          Length = 175

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 STSLFGLKTLFDVFQKTHFLGSISTILKMRFLSL 387
           S+  F + +  DVF  T FLG +ST+L + FL L
Sbjct: 113 SSFKFQVTSTLDVFYITIFLGFVSTLLILLFLGL 146


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 41  YLIYFNFIMNERLLGGAKAFPVSPGHVGEQGLSQE 145
           Y +YF  I N  LLGG    P+  G   + G  QE
Sbjct: 7   YAVYFKEIPNFPLLGGDMGLPLLTGDYSDIGDIQE 41


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 41  YLIYFNFIMNERLLGGAKAFPVSPGHVGEQGLSQE 145
           Y +YF  I N  LLGG    P+  G   + G  QE
Sbjct: 7   YAVYFKEIPNFPLLGGDMGLPLLTGDYSDIGDIQE 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,607,283
Number of Sequences: 27780
Number of extensions: 181358
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)