Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D01
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    30   0.36 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.4  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   3.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.4  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   7.8  

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 385 FLHCRYDDLANILRFSPKEGRTSYLGGANGLSSSVGVI 272
           FLHC +  +  +L F+   GRTS   G  GL+  V VI
Sbjct: 163 FLHCYHHGITALLCFTQLLGRTSVQWGVIGLNLYVHVI 200


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 571 FRIPHAPLCAFHPGAFHFYHDTLYQNFVP 485
           F + H PL ++ P  + ++  T+  NF+P
Sbjct: 179 FFVDHPPLSSYSPFLWFYFFITIVGNFIP 207


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 421 RLIRPILSTHQLFLHCRYDDLANILRFSPK 332
           R ++P LS   +F+   Y D+ N   F+P+
Sbjct: 203 RFVKPALSPTHVFIRPPYSDMQNASTFNPE 232


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 430 PSRRLIRPILSTHQLFLHCRYDDLANI 350
           P +RL+ P L  H +F H   +DLA++
Sbjct: 203 PEKRLLSP-LEVHTIFTHISSEDLAHL 228


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 359  EIIVTTMQEQLMGRKYRSDQAPRWTEEI 442
            +IIVT  Q+     K R   +P W EEI
Sbjct: 1347 KIIVTDNQDHSFKTKSRKGPSPSWNEEI 1374


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 567  GSHMHRCAHFTPAPFISIMIHC 502
            G H H+ +H  P   I +++HC
Sbjct: 1062 GIHFHKLSHKNPNEIIRMILHC 1083


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 282 TELDKPLAPPKYEVRPSLGENLKMFARS---S*RQCRNS*WVESIGRIKRRDGQRKS--L 446
           T  DKP+AP  +  R  + E LK    +   S   C+++ +V+    I  + G R+   L
Sbjct: 68  TNADKPVAPAAFNERILMMEKLKTLIHNCTVSVAICKHALFVDKCRSISNKLGPREQVYL 127

Query: 447 TEFDKEFR 470
             FD   R
Sbjct: 128 VGFDTLIR 135


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 434 EEIANRVRQRVQDLDMKRYKILVQ 505
           EE+ N++R+++Q+ D+     LVQ
Sbjct: 93  EELKNKIREQIQERDIHEIDSLVQ 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,218
Number of Sequences: 5004
Number of extensions: 51516
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)