Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_D01
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   7.3  

>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
 Frame = +2

Query: 347 QNVREIIVTTMQEQLMGRK------YRSDQAPRWTEEIANRVRQRVQDLDMKRYKILVQC 508
           Q  R   V  M ++++G K      Y  D+A   +++I+  +R+R++ L + RYK ++Q 
Sbjct: 17  QKFRPKAVAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQT 76

Query: 509 IMIEMKGAGVKCAQRCMWDPETDDYVGDLFRNETIYCYTVAYGIYMY 649
           ++ E  G G   A +C+WD + D Y+   +   +I+C  + + I+ Y
Sbjct: 77  MIAEQCGNGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAIFHY 123


>Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 586 RRFIQK*NYILLHCCVRHIYVLNRFKKK 669
           RRF +K  Y+L+  CV   Y LNRF+++
Sbjct: 21  RRFYEKNGYLLIRNCVPQ-YELNRFRQR 47


>Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 586 RRFIQK*NYILLHCCVRHIYVLNRFKKK 669
           RRF +K  Y+L+  CV   Y LNRF+++
Sbjct: 21  RRFYEKNGYLLIRNCVPQ-YELNRFRQR 47


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 548 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 411
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 548 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 411
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 548 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 411
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,330
Number of Sequences: 27780
Number of extensions: 291976
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)