Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C23
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   111   4e-25
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   111   4e-25

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  111 bits (268), Expect = 4e-25
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
 Frame = +3

Query: 123 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 302
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 303 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 473
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 474 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 644
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 645 ITPWFNMI-RRHRLKLWW 695
            TPW  +  +    + WW
Sbjct: 200 FTPWLKLFSQTETFEKWW 217


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  111 bits (268), Expect = 4e-25
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
 Frame = +3

Query: 123 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 302
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 303 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 473
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 474 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 644
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 645 ITPWFNMI-RRHRLKLWW 695
            TPW  +  +    + WW
Sbjct: 200 FTPWLKLFSQTETFEKWW 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,196
Number of Sequences: 27780
Number of extensions: 420999
Number of successful extensions: 1183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)