Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C22
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    34   0.025
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    31   0.13 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    30   0.41 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   0.54 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   2.9  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.8  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.0  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   5.0  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   6.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.8  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   8.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.8  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +3

Query: 516 TDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFSRSETPTALVTAK 695
           T S   P + S   + S +   P +A++T+S +    AST A +   SRS  PT      
Sbjct: 299 TTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT-----D 353

Query: 696 TPXTFPDARTTMEN 737
           T  +   A TT EN
Sbjct: 354 TTNSISFANTTPEN 367


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = +3

Query: 414 PPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVTLI-PKI 590
           P   S   +LPT +   S       +S   +  QT    RPP  SPT   +  T I P +
Sbjct: 138 PSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPP--SPTSITTTSTSIDPSV 195

Query: 591 AVNTTSVSRALPASTVAPSEPFSRSETPT 677
           A ++ S       +T   + P SR   PT
Sbjct: 196 AFSSKST-----LATTRTNAPLSRPSQPT 219


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 534 PPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFSRSETPTALVTAKTP 701
           P +RS +L  S V LIP +  +  + S + PAS      P S S +  + V +  P
Sbjct: 439 PSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMP 494


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
 Frame = +3

Query: 516 TDSAARPPVRSPTLARSVVT---LIPKIAVNTTSV-------SRALPASTVAPSEPFSRS 665
           TD    PP  S T + S +T   +IP  +  TT+        S  LP+S ++ +   S S
Sbjct: 184 TDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSS 243

Query: 666 ETPTALVTA-KTPXT 707
             PT+++T+  TP T
Sbjct: 244 VLPTSIITSTSTPVT 258


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +2

Query: 164 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 289
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 513 QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFS 659
           Q  SA  P  R  +   +  T  P     +TS      AST++PS PFS
Sbjct: 348 QNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFS 396


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +3

Query: 525 AARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFSRSETPTALVTAKTPX 704
           ++RPP R P+L+      IP  +  T S     P   +AP      S  P    T+K P 
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPV-----SMNPAINSTSKPPL 292

Query: 705 TFPDARTT 728
             P +R +
Sbjct: 293 PPPSSRVS 300


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 522 SAARPPVRSPTLARSVVTLIPKIAVNTTSVSRALPASTVAPSEPFSRSETPTA 680
           S+ RP   S   A S  T  P  A + T VS+ + AST   +EP  ++ TP++
Sbjct: 310 SSTRPS--SADTAGSPATSPPATADSKTIVSKTISASTTQQTEPLQQT-TPSS 359


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 600 TTSVSRALPASTVAPSEPFSRSE-TPTALVTAKTPXTFPDARTT 728
           T+SVS  +P+S ++ + P S SE TP +   A +  +     TT
Sbjct: 214 TSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTT 257


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 188 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 298
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 690 QLPVPSASPILKTVPMGQP 634
           +LPVPS +PIL T P+  P
Sbjct: 56  KLPVPSTNPILTTEPIVGP 74


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 589 IFGMSVTTERASVGDLT-GGRAAESV--CYFFVFALRNLIS 476
           +FG  VTTE + + DLT   RA + V   Y + FA +NL++
Sbjct: 213 LFGSKVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVT 253


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = +3

Query: 414 PPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAARPPVRSPTLARSVVT---LIP 584
           P + ++ P   +T +P S      F +  T    T SA+ P   S  +  S  T      
Sbjct: 632 PTSSASTPLSNSTVAPTSTFTSSGFNT--TSGLPTSSASTPSSNSSIVPTSTFTSSGFNT 689

Query: 585 KIAVNTTSVSRALPASTVAPSEPFSRS 665
              + T+S S  L  STVAP+  F+ S
Sbjct: 690 TSGLPTSSASTPLSNSTVAPTSTFTSS 716


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 627 ASTVAPSEPFSRSETPTA 680
           AS+  PSE  SR+ETPTA
Sbjct: 495 ASSPNPSETNSRAETPTA 512


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 290 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 195
           RC+G +S  +  I++ WR   D YR  SV L R
Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 362 FPDENKCDVFWNCW 403
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,628
Number of Sequences: 5004
Number of extensions: 62334
Number of successful extensions: 246
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)