Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C16
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   1.6  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.4  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/45 (26%), Positives = 28/45 (62%)
 Frame = -1

Query: 378 DVDLKNSQ*ITFVKVIHYTPQYDLRTSSLQGRKQHSSTTPGSLRD 244
           ++D+ +SQ  +    ++ +P+  L+TSS++ R+ HS+ +   + D
Sbjct: 375 EIDVGSSQSSSKTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSD 419


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 378 DVDLKNSQ*ITFVKVIHYTPQYDLRTSSLQGRKQHSSTTPGSL 250
           D D+ N Q I+ +KV    P Y   T SL+ +K H++  P S+
Sbjct: 71  DKDIVN-QAISQLKV----PDYSTNTYSLKPKKPHTTPKPASI 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,307
Number of Sequences: 5004
Number of extensions: 21906
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)