Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C16
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0252 + 16098848-16099142,16099258-16099375,16100474-161005...    28   4.8  
08_02_0898 + 22396290-22396724                                         27   6.4  
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579...    27   6.4  
09_03_0156 - 12844549-12845138,12845237-12845723                       27   8.5  

>09_04_0252 +
           16098848-16099142,16099258-16099375,16100474-16100552,
           16101005-16101250
          Length = 245

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 242 ASMXPASKARTAHRRVXPLRSTRKRVXAPSVGRS-TCARPPA 120
           AS  P+S + T      P+ +      AP+V RS T  RPPA
Sbjct: 28  ASFSPSSSSSTMAASPSPISAAAAAADAPAVTRSITILRPPA 69


>08_02_0898 + 22396290-22396724
          Length = 144

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 202 RCAVRALLAGXILAISQGTRRSGRMLFPPLQTRGSQIVLRCVMYY 336
           +CAV   +AG +L +S      G    P ++  G  + L C   +
Sbjct: 43  KCAVSVAVAGLMLLVSLQCGAGGEQYCPDVRVEGRALWLNCAALF 87


>04_04_0944 -
           29557360-29557485,29557570-29557698,29557875-29557917,
           29558321-29558400,29558493-29558804
          Length = 229

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +1

Query: 88  RRAQFAVFKRGAGGRAHVLRPTL--GAXTRLRVLRSGXTRRCAVRA-LLAGXILAISQGT 258
           RRA+ +    G GG  H LRP L   A      L+       A+ A LLA  +L  S+G 
Sbjct: 13  RRARLSTSHGGGGGVTHPLRPRLQRRALACRADLQQDAPFAAAIGACLLASLVLPTSRGR 72

Query: 259 RRSGRM--LFPPLQTRGSQIVLRCVMYYFN 342
           R        F    TR   + +  ++ YFN
Sbjct: 73  RDDDEEEGEFGATDTRMGVMGIISLLPYFN 102


>09_03_0156 - 12844549-12845138,12845237-12845723
          Length = 358

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 CGRHLAHXLAYVCFGVEXRGGAQY 214
           CG  LAH +  V +G +   GA+Y
Sbjct: 293 CGTRLAHAVTVVGYGTDASSGAKY 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,857,079
Number of Sequences: 37544
Number of extensions: 167307
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)