Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_C16
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical pr... 30 1.1
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 30 1.1
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 30 1.1
AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like ... 30 1.1
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 30 1.1
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z73971-12|CAC42267.1| 718|Caenorhabditis elegans Hypothetical p... 27 5.8
Z72515-6|CAA96686.2| 718|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF043104-1|AAC33846.1| 111|Caenorhabditis elegans sol protein p... 27 5.8
>Z70683-4|CAC42282.1| 109|Caenorhabditis elegans Hypothetical
protein F13B12.5 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 212 YAPYWQEXYL--RSRKEPGVVDECCFRPCKLEVLKSYC 319
YAP ++ + +K G+ ECC + C LK++C
Sbjct: 66 YAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 251 CEIASMXPASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARPPAPRLKT 105
C +S +S + V R RKR +PS ST A PP P+ T
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQPPT 278
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 251 CEIASMXPASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARPPAPRLKT 105
C +S +S + V R RKR +PS ST A PP P+ T
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQPPT 278
>AF070472-1|AAC33275.1| 109|Caenorhabditis elegans insulin-like
peptide protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 212 YAPYWQEXYL--RSRKEPGVVDECCFRPCKLEVLKSYC 319
YAP ++ + +K G+ ECC + C LK++C
Sbjct: 66 YAPTTRDLFHIHHQQKRGGIATECCEKRCSFAYLKTFC 103
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 251 CEIASMXPASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARPPAPRLKT 105
C +S +S + V R RKR +PS ST A PP P+ T
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQPPT 278
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = -2
Query: 263 RRVPCEIASMXPASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARPPAPR 114
RR P + S P + A RR P S K AP +S PPAPR
Sbjct: 391 RRSPSKSRSPAPKREIPPARRRRSP--SASKSPPAPKRAKSRSKSPPAPR 438
>Z73971-12|CAC42267.1| 718|Caenorhabditis elegans Hypothetical
protein T11A5.6 protein.
Length = 718
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 296 VCKGGNNIRPLRRVPCEIASMXP---ASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARP 126
+C+G + +PL + P ++ P R + L + R R A + R+T R
Sbjct: 21 ICQGCGSQKPLTKKPAKLTGSFPKIITDTVRDVSNAISDLVNNRDRSPAHNFVRATHFRT 80
Query: 125 PAP 117
P P
Sbjct: 81 PLP 83
>Z72515-6|CAA96686.2| 718|Caenorhabditis elegans Hypothetical
protein T11A5.6 protein.
Length = 718
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 296 VCKGGNNIRPLRRVPCEIASMXP---ASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARP 126
+C+G + +PL + P ++ P R + L + R R A + R+T R
Sbjct: 21 ICQGCGSQKPLTKKPAKLTGSFPKIITDTVRDVSNAISDLVNNRDRSPAHNFVRATHFRT 80
Query: 125 PAP 117
P P
Sbjct: 81 PLP 83
>AF043104-1|AAC33846.1| 111|Caenorhabditis elegans sol protein
protein.
Length = 111
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -2
Query: 296 VCKGGNNIRPLRRVPCEIASMXP---ASKARTAHRRVXPLRSTRKRVXAPSVGRSTCARP 126
+C+G + +PL + P ++ P R + L + R R A + R+T R
Sbjct: 5 ICQGCGSQKPLTKKPAKLTGSFPKIITDTVRDVSNAISDLVNNRDRSPAHNFVRATHFRT 64
Query: 125 PAP 117
P P
Sbjct: 65 PLP 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,104,111
Number of Sequences: 27780
Number of extensions: 133327
Number of successful extensions: 301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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