Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C16
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 69  ARXQHGALEAFDEKGLSRPTDWM 1
           A    G LEA     LS+P  W+
Sbjct: 206 AEDARGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 69  ARXQHGALEAFDEKGLSRPTDWM 1
           A    G LEA     LS+P  W+
Sbjct: 296 AEDARGILEAARRSNLSQPFQWL 318


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 156 KCRPQYVRATACAALEDGKLSTTTKXNMT 70
           K +  YV  +    LEDGKL    K  ++
Sbjct: 240 KKKVNYVYRSVDQVLEDGKLKPNKKVRIS 268


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 TRGSQIVLRCVMYYFNKSYLLTV 363
           +RG   VLRCV+  F K  +  V
Sbjct: 143 SRGCTAVLRCVVPSFVKDLVRVV 165


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 TRGSQIVLRCVMYYFNKSYLLTV 363
           +RG   VLRCV+  F K  +  V
Sbjct: 143 SRGCTAVLRCVVPSFVKDLVRVV 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,107
Number of Sequences: 438
Number of extensions: 1622
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)