Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C13
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    30   0.63 
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777           29   1.4  
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296     27   4.4  
05_01_0206 + 1487034-1489430                                           27   5.8  
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449...    27   7.7  

>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 MSLTRYRGGPPPHSRGVGG 192
           MS    RG PPPH  GVGG
Sbjct: 1   MSTAARRGHPPPHENGVGG 19


>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
          Length = 248

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +1

Query: 82  GAPTGTAFTNLYVYLNQTMSLTRYRGGPPPHSRGVGGGDPLVYRLHR 222
           GA   +A   L   L    S  R  GG PPH R    G P   RL R
Sbjct: 126 GADHTSAKAALTGILTAIFSSARRAGGSPPHGRRYNAGAPTGRRLDR 172


>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
          Length = 191

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 157 GGPPPHSRGVGGG 195
           G PPPH RG GGG
Sbjct: 106 GYPPPHQRGGGGG 118


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 50  QCWGPRGGXVAA 85
           +CWGPRGG V A
Sbjct: 161 RCWGPRGGAVEA 172


>06_01_0618 -
           4492057-4492590,4492780-4493192,4493714-4494026,
           4495257-4495828,4498324-4498600
          Length = 702

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 82  GAPTGTAFTNLYVYLNQTMSLTRYRGGPPPHSRGVGGGDPLVYRLHR 222
           GA   +A   L   L    S  R   G PPH R    G P   RL R
Sbjct: 156 GADHTSARAALTGILTAIFSSARRAAGSPPHGRRYNAGAPTGRRLDR 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,933
Number of Sequences: 37544
Number of extensions: 139131
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)