Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C13
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    27   5.3  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    27   5.3  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    27   5.3  

>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 79  GGAPTGTAFTNLYVYLNQTMSLTRYR--GGPPPHSRGVGGGDPL 204
           G A T  A   L V+L + M+L+        P H  G  GGDP+
Sbjct: 171 GFAATAVAEAALTVHLKKAMNLSEQEVCDCAPKHGPGCNGGDPV 214


>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 109 NLYVYLNQTMSLTRYRGGP 165
           NL  YLNQTM L  Y  GP
Sbjct: 77  NLNTYLNQTMGLGMYLQGP 95


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 112 LYVYLNQTMSLTRYRGGPPPHSRGVGGGDPLV 207
           +Y+ ++  + +TRY  GPPP    V G  P V
Sbjct: 79  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 108


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 112 LYVYLNQTMSLTRYRGGPPPHSRGVGGGDPLV 207
           +Y+ ++  + +TRY  GPPP    V G  P V
Sbjct: 94  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 123


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 112 LYVYLNQTMSLTRYRGGPPPHSRGVGGGDPLV 207
           +Y+ ++  + +TRY  GPPP    V G  P V
Sbjct: 79  IYIIISYFIRITRYPPGPPP--MAVFGNSPFV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,254
Number of Sequences: 27780
Number of extensions: 98545
Number of successful extensions: 233
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)