Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_C12
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 154 1e-38
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 36 0.005
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 28 1.1
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.5
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 9.9
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.9
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 154 bits (374), Expect = 1e-38
Identities = 78/157 (49%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Frame = +2
Query: 203 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 382
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 383 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNXXXXXX 559
K TA +FK+L KYRPET +P ++ G N
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 560 XXXXXXXXXIAHDVDPIELVLFLPXLCRKMGVPYCIV 670
IA DVDPIELV+FLP LC+KMGVPY IV
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIV 180
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 524 IRSGTNXXXXXXXXXXXXXXXIAHDVDPIELVLFLPXLCRKMGVPYCIV 670
+R G N +A D +PIE++L LP LC VPY V
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 587 IAHDVDPIELVLFLPXLCRKMGVPY 661
+A D+ P++++ +P LC VPY
Sbjct: 75 LAGDISPMDVISHIPVLCEDNNVPY 99
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 317 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 418
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 545 LCLCRIGWC 519
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 301 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 390
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 499 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 329
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 238 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 393
++ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/63 (23%), Positives = 23/63 (36%)
Frame = +1
Query: 178 KG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSD 357
KG Q+ S +E ++L H P P P S + ESAP +
Sbjct: 280 KGAIQDSSIQSYLDEEEKLSRELDHKTKDASSTNDSQTTPLPPPPPVAVNSTNDESAPQN 339
Query: 358 QPI 366
+ +
Sbjct: 340 EEL 342
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 389 TAKGLFKILEKYR 427
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,723
Number of Sequences: 5004
Number of extensions: 43225
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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