Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C11
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    27   2.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.6  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.6  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    27   3.5  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   6.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   6.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   8.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.0  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 245 SMVRQRCGQLIEDL*MVDCLSTSVLLRARCQFGKHRCRVSATQTQLR 105
           S  R+RCG + E L   +C+ + V +  R    KHR  V+    +LR
Sbjct: 85  SFERRRCGHIDEALSPSECIQSVVNINGR---NKHRYVVATQDPELR 128


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 184 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNT 80
           +L+ F GL VNL  I A      HN DHG + H++
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHS 486


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 108 QLCLRRRNPASMFSKLTSSPKKHRS 182
           QL LRR+  A+  SKL+SS   H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 680 LKALPKDYYQQTYKALPS--DYYQPQASEQQASVXAPPNXQPXEGKAYXSQGSYVP 841
           L ALP+D    TY+A PS  D      S    SV +PP  +   G     Q   +P
Sbjct: 32  LPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESRREGGMGSGYQRDAIP 87


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 327 RILRTTLKKYMMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 464
           R++  + +K+ + P T DKT    +P D +  N+    I+S P TS
Sbjct: 21  RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 137 IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 241
           ID+  +D  P   E AQKY+ + PFT P  A     LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/80 (23%), Positives = 36/80 (45%)
 Frame = +2

Query: 287 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 466
           PT+    +  K +     Y +  Y+ ++   +D   +    Y    + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392

Query: 467 GSYIYKDGKNDLVKVRYWSD 526
            + I   G  DL K+ +  D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 689 LPKDYYQQTYKALPSDYYQPQAS 757
           +PK Y  + Y  +PS  Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 379 TRRSRCICLRIPDSRICEGRKSRQIRR 459
           TRRS    L+IPDS IC  R+     R
Sbjct: 461 TRRSSFSTLKIPDSDICFTRRRSDSNR 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,469
Number of Sequences: 5004
Number of extensions: 68793
Number of successful extensions: 240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)