Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_C11
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 34 0.11
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 33 0.26
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 30 1.9
AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math... 30 2.5
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 29 3.3
Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 28 9.9
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 28 9.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 9.9
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 28 9.9
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 28 9.9
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/85 (25%), Positives = 31/85 (36%)
Frame = +3
Query: 300 TTGRTERKSRILRTTLKKYMMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIS 479
TT T + TT P TT PT T + + + P T+P +
Sbjct: 225 TTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTT 284
Query: 480 TRTAKMISSRYVTGQTVTVSTRKTT 554
T T +++ T T T KTT
Sbjct: 285 TPTTTTTTAKTTKSTTTTTKTTKTT 309
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 33.1 bits (72), Expect = 0.26
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 279 KQAPLLDTTGRTERKSRILRTTLKKYMMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 458
K+ LLD + +KS ++ TT KK K + +P+ AS P+
Sbjct: 11 KKTSLLDPS---PKKSSVIETTTKK---TSGIESKLLPNELPSTGTTGTSGVKNGASSPK 64
Query: 459 TSPARISTRTAKMISSRYVTGQTVTVST---RKTTYLRS 566
TSPA+ +T T +++ + T +ST RK T +S
Sbjct: 65 TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 281 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 451
+G T+ N + N +Y+++ D Q + G + Y + ++ +PE++K +EN +
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361
Query: 452 SGDVTGSYIYKDGKNDLVKVRYWSDRD 532
K NDLVKV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378
>AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math
domain containingprotein 5 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 290 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 430
TL H +KN ++E+ ED+ ++ S H ++ LG Y Y Y++ ESA
Sbjct: 9 TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 695 KDYYQQTYKALPSDYYQPQASEQQASVXAPPNXQPXEG--KAYXSQGSYVPNQGSYNQ 862
+ +Y Q + + Q QAS+QQ P N P KAY + VP+ +NQ
Sbjct: 45 QQHYHQQQQQQQHAHQQKQASQQQQQQQYPYNNYPSPNAIKAYQAAYPSVPHASVFNQ 102
>Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical
protein K02E11.10 protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 737 YYQPQASEQQASVXAPPNXQPXEGKAYXSQGSYVPNQGSYNQG 865
Y P A++Q A + AP + Y + P+ G+Y+QG
Sbjct: 316 YEAPAAAQQPAQLSAPAPAGTVQASGYQAANVAQPSGGAYSQG 358
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 704 YQQTYKALPSDYYQPQASEQQASVXAPPNXQP 799
YQQ + +LP PQ +QQ S PP P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 704 YQQTYKALPSDYYQPQASEQQASVXAPPNXQP 799
YQQ + +LP PQ +QQ S PP P
Sbjct: 740 YQQQHPSLPRSASTPQPIQQQQSSIPPPPPPP 771
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 757 GCLWLVIITWKGFVGLLVII 698
GC+W V+I W G+ +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +2
Query: 221 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 400
GR ++ IK D RF+ G GH G ++ Y D+ HG + G
Sbjct: 88 GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147
Query: 401 AYGYQT 418
Y T
Sbjct: 148 VEQYHT 153
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 728 PSDY--YQPQASEQQASVXAPPNXQPXEGKAYXSQGSYVPNQGSYNQG 865
PS+Y Y P +QQ PP P +G QG P QG QG
Sbjct: 302 PSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQG---PPQGGPPQG 346
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 757 GCLWLVIITWKGFVGLLVII 698
GC+W V+I W G+ +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 757 GCLWLVIITWKGFVGLLVII 698
GC+W V+I W G+ +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,272
Number of Sequences: 27780
Number of extensions: 402076
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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