Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_C02
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0130 - 11622139-11623325,11626144-11627116 37 0.017
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469... 32 0.64
06_03_0186 - 17653101-17653205,17653594-17653660,17654744-176548... 30 2.6
06_01_0220 - 1673657-1675765 30 2.6
01_03_0102 - 12565917-12566258 30 2.6
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 29 3.4
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 29 3.4
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027 29 4.5
12_02_0628 + 21357876-21359921 29 5.9
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 29 5.9
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 5.9
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 5.9
04_03_1025 + 21803807-21805249 29 5.9
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 29 5.9
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 28 7.8
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -3
Query: 707 RSMCXYGGXSADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDDCWARDHIHAGLVR 528
R++ GG + D G + GC C G++ V+ D C G C R I GL
Sbjct: 147 RTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGC-CRTSIPVGLQY 205
Query: 527 NRSWSDD 507
W DD
Sbjct: 206 YYVWFDD 212
>06_03_0472 +
21145523-21145892,21146098-21146141,21146916-21146974,
21147090-21147162,21147281-21147342,21147424-21147499,
21147618-21147692,21148699-21148782,21148947-21149015,
21149614-21149673,21150211-21150288,21150468-21150556,
21150868-21150964,21151084-21151137,21151643-21151738,
21151930-21152118,21152200-21152277,21152511-21152555,
21152728-21152820,21152907-21152987
Length = 623
Score = 31.9 bits (69), Expect = 0.64
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 686 GXSADIHAGLMRHGCWG--YCSDHGGSIGVSY-DGSSDCVGDDCWARDHIHAGLVRNRSW 516
G SA + G + G + S ++G + GSSDCVGDD WA + + RN
Sbjct: 277 GISATLCGGKTKEGVFVGVLLSMSSTAVGAQFVGGSSDCVGDDHWAEPVLKFLMERNSIN 336
Query: 515 SDDGSTVSQVTQGT 474
+ G QVT GT
Sbjct: 337 ALHG----QVTVGT 346
>06_03_0186 -
17653101-17653205,17653594-17653660,17654744-17654898,
17655759-17655995
Length = 187
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 192 AGRGGPGRQRDDAGAAPPAK-RSRKPQRRER 103
AG G G GAA PA+ R R+P+RR+R
Sbjct: 46 AGAAGGGSGESGGGAANPAQARRRRPRRRQR 76
>06_01_0220 - 1673657-1675765
Length = 702
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 686 GXSADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGD 570
G +A I+ L R G D GG +G+ YDGS D
Sbjct: 317 GEAAQIYCELARLGAAMRVIDVGGGLGIDYDGSHSAQTD 355
>01_03_0102 - 12565917-12566258
Length = 113
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 92 GGVVRSRLC-GLRLLFAGGAAPASSRCRPGPPRPA 193
G V R+ L GL LL AG AA +R PG P PA
Sbjct: 8 GAVHRAGLAVGLLLLAAGAAACHGARAVPGEPEPA 42
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 224 ASVDDFRGVQRPAVGVQD----DSGMMRGLRHRQKGAASHRGESEQHHHRFHNERGLCFL 57
A++ D RG+ GV D G G + + + ++ H R+H E G+ F
Sbjct: 241 ANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFA 300
Query: 56 TMY 48
++Y
Sbjct: 301 SLY 303
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 207 PRCPEAGRGGPGRQRDDAGAAPPAKRSRKPQRR 109
PR AG GG QR++A +A + SR+ +RR
Sbjct: 7 PRAASAGGGGACGQREEASSALREEASRRRERR 39
>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
Length = 635
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 80 YEIDGGVVRSRLCGLRLLFAGGAAPASSRCRPGPPRP 190
Y D +V+ GL LL +G A PA+ + P PP P
Sbjct: 91 YTPDNNLVKDHCNGLLLLESGVANPATRQWVPFPPAP 127
>12_02_0628 + 21357876-21359921
Length = 681
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 195 EAGRGGPGRQRDDAGAAPPAKRSRKP 118
+ G GG G DD+ AAP R R P
Sbjct: 61 DGGGGGDGGDSDDSDAAPTLSRKRPP 86
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -3
Query: 611 IGVSYDGSSDCVGDDCWARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 432
I + G C+G + G + N ++S +G T S G PV+ + S W
Sbjct: 716 IAIMAKGKLRCIGTSIRLKSKFGTGYIANVNFSGNGHTQSPNINGNTEVPVNPNIESVKW 775
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 204 RCPEAGRGGPGRQRDDAGAAPPAKRSRKPQRRER 103
R P RG P R+R +PPA+R R P R R
Sbjct: 227 RSPARDRGSPPRRR-----SPPARRERSPAPRSR 255
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 204 RCPEAGRGGPGRQRDDAGAAPPAKRSRKPQRR 109
R P RG P R+R+ + PA RSR P+RR
Sbjct: 20 RSPARDRGSPPRRRERS----PAARSRSPRRR 47
>04_03_1025 + 21803807-21805249
Length = 480
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 444 GHGHGHWLKKRSLGHLAYSAPII 512
GHGHGH L++R L +A +A ++
Sbjct: 8 GHGHGHELRRRRLLPVASAAAVL 30
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 458 SMTVTSKYWCSVGGVCEDWCGNSVAIDGGA 369
S T++ + W +GG+ E G SV I G A
Sbjct: 78 SKTISGRVWTEIGGLDEAAAGRSVLIRGAA 107
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 443 WSRSWTLAEKTFPGSLGLQCSHHRSSCGF 529
W+ A K + LG + SHH S+CGF
Sbjct: 122 WTTPEAKATKDWRKQLGEKLSHHLSTCGF 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,770,221
Number of Sequences: 37544
Number of extensions: 393702
Number of successful extensions: 1760
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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