Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C02
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    32   0.57 
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    30   2.3  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    30   2.3  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    30   2.3  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U64853-3|AAB04976.1|  565|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 198 PEAGRGGPGRQRDDAGAAPPAKRSR 124
           PEAG  GP  Q   + +APPAKR+R
Sbjct: 53  PEAGPVGPSPQGASSSSAPPAKRAR 77


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 195 EAGRGGPGRQRDDAGAAPPAKRSRKPQRRER 103
           E  RG P R  D  G+  P +RSR P+RR R
Sbjct: 70  EMARGKP-RGNDRHGSRSPRRRSRSPRRRSR 99


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 195 EAGRGGPGRQRDDAGAAPPAKRSRKPQRRER 103
           E  RG P R  D  G+  P +RSR P+RR R
Sbjct: 70  EMARGKP-RGNDRHGSRSPRRRSRSPRRRSR 99


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 195 EAGRGGPGRQRDDAGAAPPAKRSRKPQRRER 103
           E  RG P R  D  G+  P +RSR P+RR R
Sbjct: 70  EMARGKP-RGNDRHGSRSPRRRSRSPRRRSR 99


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 189 GRGGPGRQR----DDAGAA-PPAKRSRKPQRR 109
           GRGG GR R     D GA  PPAKR RK + +
Sbjct: 72  GRGGRGRPRGSKNSDGGAGGPPAKRGRKKKAK 103


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 161  MMRGLRHRQKGAASHRGESEQHHHRFHN 78
            +MR   + Q  + SH+  S  +HH  HN
Sbjct: 1304 LMRNSHYNQNMSTSHQSSSSNNHHYSHN 1331


>U64853-3|AAB04976.1|  565|Caenorhabditis elegans Hypothetical
           protein K11G9.1 protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = -3

Query: 251 QYFSLKVESASVDDFRGVQRPAVGVQDDSGMMRGLRHRQKGAASHRGESEQHHHRFHNER 72
           + F    ++ S  D   + R A     DS    G+R   + AA H  E   ++  + N  
Sbjct: 388 EIFEYYTKNISEGDEEAIMRKAAEFVGDSIFHTGVRATAQNAAEHGDEVWLYNFDYCNPD 447

Query: 71  GLCFLTMYVDHFKP 30
           G   L  Y+ + +P
Sbjct: 448 GFAPLKGYLPYIEP 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,700
Number of Sequences: 27780
Number of extensions: 271721
Number of successful extensions: 1148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)