Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C02
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 248 YFSLKVESASVDDFRGV-----QRPAVGVQDDSGMMRGLRHRQKGAASHRGESEQHHHRF 84
           Y S K+++A+VD    V       P V  Q    M     H Q     H+ +++Q H + 
Sbjct: 138 YASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQA 197

Query: 83  HNE 75
           H +
Sbjct: 198 HEQ 200


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
 Frame = -3

Query: 638 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 492
           G+   +  S+ V++DGS          S C  D  W   D  H  + +  SW+ DG+ V 
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDM-KFGSWTYDGNQVD 140

Query: 491 QVTQGTFFQPVSMTVTSKYWCSVG 420
            V        +S  +T+  W  +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
 Frame = -3

Query: 638 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 492
           G+   +  S+ V++DGS          S C  D  W   D  H  + +  SW+ DG+ V 
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140

Query: 491 QVTQGTFFQPVSMTVTSKYWCSVG 420
            V        +S  +T+  W  +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
 Frame = -3

Query: 638 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 492
           G+   +  S+ V++DGS          S C  D  W   D  H  + +  SW+ DG+ V 
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140

Query: 491 QVTQGTFFQPVSMTVTSKYWCSVG 420
            V        +S  +T+  W  +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
 Frame = -3

Query: 638 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 492
           G+   +  S+ V++DGS          S C  D  W   D  H  + +  SW+ DG+ V 
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140

Query: 491 QVTQGTFFQPVSMTVTSKYWCSVG 420
            V        +S  +T+  W  +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 DPHGRPLDTAEVINARALHLQAKVLE 254
           DP+ RP+ + ++ N   + L  K++E
Sbjct: 56  DPNVRPISSHQIANNVTMQLLPKLME 81


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 137 QKGAASHRGESEQHHH 90
           +  +  H G+S  HHH
Sbjct: 391 ENNSRGHSGQSSSHHH 406


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
 Frame = -3

Query: 638 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 492
           G+   +  S+ V++DGS          S C  D  W   D  H  + +  SW+ DG+ V 
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDM-KFGSWTYDGNQVD 140

Query: 491 QVTQGTFFQPVSMTVTSKYWCSVG 420
            V        +S  +T+  W  +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 139 RWRSPRIIPLSSWTPTAGLWTPRKSSTLALSTFKLKYW 252
           RW +P  I    +T  + +W+        +S  +  YW
Sbjct: 803 RWTAPEAIAFRKFTSASDVWSMGIVCWEVMSYGERPYW 840


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 139 RWRSPRIIPLSSWTPTAGLWTPRKSSTLALSTFKLKY 249
           +W+   I PL+ W   A  W       L     +L Y
Sbjct: 421 QWQGNPISPLNDWYSLASSWPALVPLALGFLAGELTY 457


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 110 ESEQHHHRFHNERGLCFLTMYVDHFKPH 27
           E+ Q HH   N       T   DH +P+
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHHRPY 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,642
Number of Sequences: 438
Number of extensions: 3288
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)