Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C01
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       31   1.5  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                29   5.9  

>SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 539 LDWAAFAVMTLPSLAIPFGLWY 604
           +DW  F++M++P++ IPF +WY
Sbjct: 1   VDWGLFSLMSIPTMLIPFMVWY 22


>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = -3

Query: 435 ALYVTSAELKLK*PYLLDRTVTTWDTLV*---GAILSISAVSCPPTTVNTSGWKPLSTSF 265
           +LYV    L+ + P + D T ++   +V    G +LSISAV+ P T + +SG + L    
Sbjct: 101 SLYVLQDLLQGEPPIVQDVTFSSEYLVVLLQSGLVLSISAVT-PDTAILSSG-RELVVKH 158

Query: 264 TSTAGALPTLNNVYFTSISIFSTKYL 187
             +A A+PT NN   T  ++ S  ++
Sbjct: 159 QDSAIAMPTGNNTIKTVATVESGGFI 184


>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 406 VEIAVLIGPDSHYMGYVSLRCNPIDFRGQLSTYYSKHVRMEAVVHE 269
           VE+ VL G +  Y G V  + +P D   +++ Y   HV  EA+V E
Sbjct: 54  VELPVLCGGEKVYTGNVKYQVSPFDHSNKIAKY---HVADEALVKE 96


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -2

Query: 514 IIFEGYDGSLSWSTADRILDVCGVFAGFVCDFRRAEVEIAVLIGPDSHYMGYVSLRCNPI 335
           I  +GY G+    +   + ++ G++ G +CD RR   +   + G    ++G  +L C+  
Sbjct: 396 ICLDGYTGADCSLSKALVPELFGIYDGGLCDIRRRPCKKTDIFG--DGFIGSENLTCHST 453

Query: 334 DFR 326
           +F+
Sbjct: 454 EFK 456


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1437 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1467



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1459 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1489



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1481 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1511



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1503 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1533



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1525 RYPYALLTIPLRSTYDTLTLYLRYPYALLTI 1555



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY LL I
Sbjct: 1591 RYPYALLTVPLRSTYDTLTLYLRYPYPLLTI 1621



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 281  RCPRVSLQQPVRSQH*TMCILLVYPYSLLNI 189
            R P   L  P+RS + T+ + L YPY+LL I
Sbjct: 1547 RYPYALLTIPLRSTYDTLTLNLRYPYALLTI 1577


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 411 ARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRISSIGRHSQL*PSR 575
           A+ ++ T PA+ P  S+  +  +Q+R P+ P+K    SS     + + +   P++
Sbjct: 106 AQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSSKETQPVQQRNPASPAK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,954,538
Number of Sequences: 59808
Number of extensions: 485346
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)