Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_C01
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...   101   6e-22
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    53   3e-07
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   3.9  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score =  101 bits (242), Expect = 6e-22
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
 Frame = +2

Query: 98  LYFVLFIAAA-VSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 274
           L+ +LF+  + V    +   A +L  KQ L+ Y VENMD +++Y L+NVG  PA +V + 
Sbjct: 5   LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64

Query: 275 D-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDAT 451
           D + F  + F +V G L    ++I   +NV+H V +R   +G+FN+++A+VTY    +  
Sbjct: 65  DRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDNENH 124

Query: 452 DVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPS 577
            V  ++++ PGEG I   ++YDR+F+     +  F ++  P+
Sbjct: 125 HV--TLTNTPGEGYIYRQREYDRRFAPKYTYFLVFFLIVAPT 164


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
 Frame = +2

Query: 98  LYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 277
           +  V  I +A++A D    A++L+ K  + KY V   +   +Y + N+G +PA++V+L D
Sbjct: 1   MQLVFLILSALAAADAS--AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58

Query: 278 -NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATD 454
              F  D F ++ G  TA    I   + + H + V              V Y  SE    
Sbjct: 59  LKSFPTDRFEILKGSATASFPVIPANSTIYHHIVVIPRVPQAIEDHDVTVNYTDSETGKR 118

Query: 455 VQYSISSAPGEGAIVAFKDYD-RKFSS-HILDWAAFAVMTLPSLAIPFGLWY 604
            + S  S    G    F +   RK    +   +  F  +  P  AIP  L++
Sbjct: 119 ARTSTVSYDKRGYTHFFAETAMRKVEGVNCTHFLGFGAIAFPLTAIPAILYW 170


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 245 SAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSH 367
           S  A+ V L  NG++  VF V GGQ    + R++    +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,807,300
Number of Sequences: 27780
Number of extensions: 358498
Number of successful extensions: 922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)