Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_B23
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    64   3e-11
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    48   2e-06
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    41   2e-04
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    38   0.002
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.1  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   4.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.9  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.6  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    25   8.6  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 29/83 (34%), Positives = 44/83 (53%)
 Frame = +3

Query: 477 CRHCTEFYPIWSELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTP 656
           C HC    P++ EL  L    +    I ++D   H+ +  +  ITG+PTL +F  +   P
Sbjct: 51  CGHCKSLAPVYEELGALFEDHNDVL-IGKIDADTHSDVADKYHITGFPTLIWFPPDGSEP 109

Query: 657 VEYQGTRDLPSLTLFLSEAFSVK 725
           V+Y   RD+ SLT F+SE   +K
Sbjct: 110 VQYSNARDVDSLTQFVSEKTGIK 132


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +3

Query: 477 CRHCTEFYPIWSELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKN-TFT 653
           C HC    P + +LAE   + DS   +A++D T +        I+G+PT+ +F  N    
Sbjct: 385 CGHCKNLAPTYEKLAE-EYSDDSNVVVAKIDATEND---ISVSISGFPTIMFFKANDKVN 440

Query: 654 PVEYQGTRDLPSLTLFLSE 710
           PV Y+G R L  L+ F+ +
Sbjct: 441 PVRYEGDRTLEDLSAFIDK 459



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 27/76 (35%), Positives = 37/76 (48%)
 Frame = +3

Query: 477 CRHCTEFYPIWSELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTP 656
           C HC    P +   A+ +  KD   ++ +VDCT    LC E  I GYPTL  F KN    
Sbjct: 51  CGHCKALAPEYESAADELE-KDG-ISLVEVDCTEEGDLCSEYSIRGYPTLNVF-KNGKQI 107

Query: 657 VEYQGTRDLPSLTLFL 704
            +Y G R   +L  ++
Sbjct: 108 SQYSGPRKHDALVKYM 123


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = +3

Query: 477 CRHCTEFYPIWSELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTP 656
           C  C +    W  +A   N    K  +A ++C V  + C +  I  +PT  +F +  F  
Sbjct: 310 CDDCDDVSTAWYAMA---NRMRGKLNVAHINCAVSKRACKQYSIQYFPTFLFFKEEAF-- 364

Query: 657 VEYQGTRDLPSLTLFLSEA 713
           VEY G  +   L  F  EA
Sbjct: 365 VEYVGLPNEGDLVSFAEEA 383


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 477 CRHCTEFYPIWSELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTP 656
           C  C  +  +WS +    NT D +  +AQV+C    ++C+   I  +PT   F    F  
Sbjct: 209 CEDCFHWEAVWSSITR--NT-DERLKMAQVNCDEEKEMCNHFHIKKFPTFRVF--QGFDS 263

Query: 657 VEYQGTRDLPSLTLFLSEAFS 719
           ++Y G      L  + ++  S
Sbjct: 264 IQYNGPLKYQQLLSYSNQVAS 284


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +3

Query: 336 KCKWYTVVTSMRPIVCEPLIEIENTKITAKLPFKTKDLNALNKNELMCRHCTEFYPIWSE 515
           K  W  +  S R I C  L+    T   A   F      AL KNE+     T+  P+W E
Sbjct: 180 KVAWTYINDSTRSIAC--LLYSPKTIAAAAFQF------ALEKNEINLSTTTDGLPVWME 231

Query: 516 LAELVNTKDSKFAIAQVD 569
            ++ V+ +D K  +  +D
Sbjct: 232 ESQ-VSYEDVKGVLTLID 248


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 510 SELAELVNTKDSKFAIAQVDCTVHAKLCHENEITGYPTLFYFH 638
           + + +L     +K     VDC    + C E  I  +P+L Y++
Sbjct: 141 TSIVQLSKKYRNKIKFKSVDCASSLEKCEEIGINSFPSLVYYN 183


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +3

Query: 480 RHCTEFYPIWSELAELVNTKDS 545
           R  +EFY ++++++++VNT D+
Sbjct: 566 RRASEFYILFNQVSDIVNTSDT 587


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 304 FPSISSIWNLKLLGLYS*TELCSGATRYGNTN 209
           FP +   W+LKL+G ++      G   YG +N
Sbjct: 589 FPQVRDGWDLKLIGKWTHEGTFPGNELYGESN 620


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 400 ISIRGSHTIGLIDVTTVYHLHFGQHGA*NIIKFPSISSIWNLK 272
           I++ G H+IGL  +  + H     +G  ++I F S    WN K
Sbjct: 200 ITLGGDHSIGLASLRALGHF----YGNVSVIHFDSHLDTWNPK 238


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 243 SSVYEYNPSNFKFQIEEMDGNFIMFYAPC*PKCK 344
           S+  E N  NF+  ++    + ++FYAP    CK
Sbjct: 31  SNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,807
Number of Sequences: 5004
Number of extensions: 68659
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)