Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B22
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0026 - 22222743-22222836,22223510-22223652,22224654-222246... 30 2.2
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842... 30 2.2
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 29 3.8
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737 29 3.8
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411... 29 5.0
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 29 5.0
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 28 6.6
03_06_0680 - 35497868-35497884,35498058-35501961 28 6.6
03_05_0777 + 27636342-27637115 28 6.6
>04_04_0026 -
22222743-22222836,22223510-22223652,22224654-22224699,
22224916-22225043,22225178-22225285
Length = 172
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 403 KEKGIFVVAKEKVGN-NTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASV--TKSFAN 573
KEK + G+ N+ SS + + D Y + I D + V TKS
Sbjct: 82 KEKDAIMFTHPPAGSFNSTGLVISSKLPRFSDMYTITIASADPQSISANKPVHFTKSVTK 141
Query: 574 FIDVNGTVVQNIVSNEITKLYHSLSSEKKEK 666
+ G +V+ + ++ +L ++E+K K
Sbjct: 142 WFTKEGVLVEGLFWKDVERLIDDYNTERKGK 172
>01_07_0297 -
42583439-42583697,42583763-42583953,42583995-42584201,
42584291-42584362,42584472-42584507
Length = 254
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 381 FDPLHYIQREGHLCGSQGEG 440
++ + IQREGHLCG G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 520 RDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 660
RDT NT + +++S + V N++S++ T L + L+ K
Sbjct: 617 RDTKSNTDKPPISQSSGQIVSFTSNPVFNVISSKPTTLSNGLADTTK 663
>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
Length = 767
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 517 MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKKE 663
++D NGN +A ++ + N D++ ++ + +ITK +LSS KE
Sbjct: 703 IKDFNGNHFDAVLSTALKNMSDIDNCMLFAVQDCQITKPARTLSSLVKE 751
>09_02_0085 +
4111333-4111492,4114766-4116044,4116113-4116206,
4116297-4116545
Length = 593
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 412 GIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVN 588
G+ V+A + +T V+ V +H DKY L++ T +TR ++ F+D++
Sbjct: 444 GLLVMASGDLHEHTAVFFR---VFRHHDKYKLLMCTDLTKSSTRAGVYKPAYGGFVDMD 499
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 300 MGLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHY 398
M LSL +PS T + V +F TDG +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 313 YPFPQSRLVLIICVSSYFILMGILTLYTTFKE 408
YPF L++ IC S + ILTLYT +K+
Sbjct: 453 YPFLFDALMMFICFSQFV----ILTLYTNYKQ 480
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 130 EAAKINKWDGAAAKNAVDDAIREVMTG 210
EAA+ K + AKN+ DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272
>03_05_0777 + 27636342-27637115
Length = 257
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 124 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 240
TAEAA++ +W A + VD A R + D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,597
Number of Sequences: 37544
Number of extensions: 382849
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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