Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B22
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical ... 123 2e-28
U27312-13|AAA68256.1| 162|Caenorhabditis elegans Hypothetical p... 31 0.84
L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protei... 31 1.1
L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protei... 31 1.1
AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell... 31 1.1
U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF036693-11|AAK29788.1| 392|Caenorhabditis elegans Hypothetical... 28 7.8
>AL032626-9|CAA21529.1| 180|Caenorhabditis elegans Hypothetical
protein Y37D8A.10 protein.
Length = 180
Score = 123 bits (296), Expect = 2e-28
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +1
Query: 124 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 300
T E K+ NKWDG KNA+D+ +++++ + ES L++ RL
Sbjct: 2 TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61
Query: 301 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 480
+DY PFP+S++VL +C SYFI MGIL +Y + EK A E G +R W SS +
Sbjct: 62 YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121
Query: 481 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSL 645
K HDDKY L + G + + +TKS +ID +G ++ +V E+ LY+ L
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRL 175
>U27312-13|AAA68256.1| 162|Caenorhabditis elegans Hypothetical
protein F26A1.14 protein.
Length = 162
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +1
Query: 463 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHS 642
E S K + + +I++R G+ + +++ + N + NG +V+N VSN IT+
Sbjct: 15 EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITRSVRK 72
Query: 643 LSSEKKEK*LILSICNLSRSDI 708
E K +++ N+ RS +
Sbjct: 73 FIDEDKHL-IVVDEENVQRSSV 93
>L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +3
Query: 366 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 545
H Y+DP Q + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 546 GIRD 557
G D
Sbjct: 120 GDDD 123
>L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +3
Query: 366 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 545
H Y+DP Q + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 546 GIRD 557
G D
Sbjct: 120 GDDD 123
>AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell
lineage protein 39 protein.
Length = 253
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +3
Query: 366 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 545
H Y+DP Q + SQG G + LG Q LC + S H+W+H
Sbjct: 66 HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119
Query: 546 GIRD 557
G D
Sbjct: 120 GDDD 123
>U00040-5|AAA50666.1| 934|Caenorhabditis elegans Hypothetical
protein C18H2.4 protein.
Length = 934
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 555 HGCLASVAIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYH 421
HG AS+ I NY + I+ H T DP V+SNL G H
Sbjct: 826 HGVYASILIE-DKTNYPTLVSIITTHGGTIVVDPKVLSNLNQGSH 869
>Z81593-1|CAB04738.1| 608|Caenorhabditis elegans Hypothetical
protein T20B3.1 protein.
Length = 608
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 532 HSCLA*QLRDCIYHRVSSHKNWLPRPW 452
HS L QL+ + +R +HKNWL W
Sbjct: 50 HSELGAQLQSALENRAKNHKNWLEDWW 76
>AF036693-11|AAK29788.1| 392|Caenorhabditis elegans Hypothetical
protein C49A9.1 protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 406 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 585
E G F K +N + WE Y K + N +V+ + NGN + +T + N+
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337
Query: 586 NGT 594
N T
Sbjct: 338 NNT 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,788,236
Number of Sequences: 27780
Number of extensions: 329770
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -