Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B19
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 30 0.37
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 29 1.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.0
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 28 2.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.4
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 4.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 7.9
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 7.9
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 469 FPQNHLRVHHHLLYQWRMLQLSIRRTWEELPISTRPIQTASIPL 600
FP++ + H+ W +LQ S + WE+L +ST + T + L
Sbjct: 557 FPRSSGKEHYQKA--WALLQTSRAKVWEKLGLSTVDVSTTDVRL 598
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 573 TNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQPGP--STN 746
++S L TS +SS+ + +P P+ P ++ P + S + A QP P S+
Sbjct: 234 SSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSK 293
Query: 747 KQGLXATFYNPETIRSEIYDRNDDVYLQPD 836
++P + + ++ +++P+
Sbjct: 294 STDNIIRSHSPVLLTPQTLSTSETKHIRPN 323
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 513 MANASTVHQENVGGTTYFYSTNSDSLNTTSGLNSSASM--DFHQPGPS 650
M+++S H +V ++ Y ++S TTSGL+SSAS+ ++ GPS
Sbjct: 139 MSSSSLSHSSSVPSSSSSYHSSS---MTTSGLSSSASIVSSTYRDGPS 183
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 513 MANASTVHQENVG--GTTYFYSTNSDSLNTTSGLNSSASMDFHQP 641
MA A V +E G + Y ++DS + + L+SSA+ D H+P
Sbjct: 484 MAEAKEVEREETRPKGESARYLEHADSNSDSEDLSSSANNDVHEP 528
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/68 (22%), Positives = 28/68 (41%)
Frame = +3
Query: 567 YSTNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQPGPSTN 746
+ST D++ + L + ++ P + + PP P S + +P P+ N
Sbjct: 271 WSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSNDFWKDSNEPAPADN 330
Query: 747 KQGLXATF 770
K + A F
Sbjct: 331 KGDMGAVF 338
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 205 NHKLSRLHRRTAVLKLWIHQYFYHTHRLT 291
N+ LS LH L++ + +YHTH LT
Sbjct: 57 NYALSILHNICLASFLYLSKCYYHTHILT 85
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 246 EIMDPSIFLP--YAPPNGLPQESKLVTYMSRSTSTP--TRSLNHAIGKLTLDSSPP 401
E D I LP P S+ + R + P T +L+H GKL +DS PP
Sbjct: 119 EARDQGITLPSYMRHPRLFDLSSEYAKWQIRMGAVPPYTITLSHIFGKLDVDSLPP 174
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 534 HQENVGGTTYFYSTNS-DSLNTTSGLNSSASMDFHQPGPSEPCLN 665
+Q N+ T S N+ S+N + ++S++ +PGP P LN
Sbjct: 603 NQSNLEHTITTSSKNTTSSINPLTAVSSNSGQSSGRPGPLSPNLN 647
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 487 RVHHHLLYQWRMLQLSIRRTWEELPISTRPIQTASIPLAVLIHRLPWISTNQVRLS 654
R+ L + WR + L R + L + S LA +IH + IS +++L+
Sbjct: 620 RIEFALAHSWRRVNLGERNVFRNLDYTKFEWHFVSCHLAEMIHFVIEISWQELQLA 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,010
Number of Sequences: 5004
Number of extensions: 70815
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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