Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B19
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 33 0.29
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 30 2.1
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 30 2.7
09_06_0081 + 20745627-20748144,20748211-20748308 29 3.6
01_05_0351 + 21269339-21269527,21269758-21269961 29 4.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.3
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 6.3
02_04_0419 - 22745804-22746106 29 6.3
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 8.4
01_06_1445 - 37405483-37406199 28 8.4
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 28 8.4
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 543 NVGGTTYFYSTNSDSLNTTSGLNSSASMDFH-QPGPSEPCLNAVGPPMVSPY 695
NV F+S N+D +N+ N+S+ H P SE C + P ++ PY
Sbjct: 168 NVSSDGAFFSLNNDKVNSKGSANASSPGCLHGSPDISETCDTCLPPNVLLPY 219
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 609 NSSASMDFHQPGPSEPCLNAVGPPMVSP 692
NSS+S D +P P+ P L +G P P
Sbjct: 298 NSSSSQDTVKPSPTSPALGQIGQPSAFP 325
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +1
Query: 442 TTMFRHRICFPQNHLRV----HHHLLYQWRMLQLSIRRTWEE---LPISTRPIQTASIPL 600
+TM H I Q ++ HH LL + L IR TW+E L + R + +++ L
Sbjct: 642 STMLDHFINILQKDFKIGYIQHHPLLQDFNQLSNMIRMTWKESKYLTVERRVLLSST--L 699
Query: 601 AVLIHRLPWIS 633
+ + +PW S
Sbjct: 700 NAIRNNIPWTS 710
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 555 TTYFYSTNSDSLNTTSGLNS--SASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQ 728
TT YS + D ++++S + S+ P P + PP+ +P A LP
Sbjct: 467 TTARYSFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAPPVPTPPAPAPPVSTLPS 526
Query: 729 PGPSTN 746
P PS +
Sbjct: 527 PAPSVH 532
>01_05_0351 + 21269339-21269527,21269758-21269961
Length = 130
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 582 DSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPP 680
DS N N+SAS DF+ G + PC A P
Sbjct: 2 DSENDMLNANNSASDDFYSCGEASPCSLAASAP 34
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 603 GLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQPGPS 740
G + A P P+ P A PP SP A+ +G P P P+
Sbjct: 311 GAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPA 356
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 588 LNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQP 731
+ +SGL S S QP S A PP P+ SQ + G+L QP
Sbjct: 2027 IQLSSGLAQSVSNP--QPSLSSMQPRAPPPPPPQPHPSQTFQGSLQQP 2072
>02_04_0419 - 22745804-22746106
Length = 100
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 754 PCLLVDGPGCGKAPAYICEAYGDTIGGPTAFRHGSDGPGWW 632
P +V G C A++ +AY +GG R G GW+
Sbjct: 36 PIFVVPGASCSNLGAWLTDAYIPAVGGEVR-RGALKGKGWF 75
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 769 KVAXRPCLLVDGPGCGKAPAYICEAYGDTIGGPTAF 662
+V P + G G G A AYGD GGP F
Sbjct: 20 QVQAAPAIAAVGVGAGGNGAAARAAYGDVFGGPPRF 55
>01_06_1445 - 37405483-37406199
Length = 238
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 642 GPSEPCLNAV--GPPMVSPYASQMYAGALPQPGP 737
G +P LN GPP+ P A+ Y A P P P
Sbjct: 5 GKPQPPLNDAYYGPPIPPPPAAAYYGAAAPPPAP 38
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 543 NVGGTTYFYSTNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVG 674
N TT+ S+N T + L+++AS GP E ++AVG
Sbjct: 240 NTTQTTWDSSSNKTQTTTLAALDTNASKQNSSSGPPEINMHAVG 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,942,974
Number of Sequences: 37544
Number of extensions: 506322
Number of successful extensions: 1448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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