Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_B19
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    28   7.5  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   7.5  
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    28   9.9  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 204 LFDSQLFMTMRVPQHVVIKGSISTRHIWK 118
           +FD+  +  +  P+H+  +G    RH+WK
Sbjct: 639 IFDNSGYSYLTTPKHLTPRGLEHVRHVWK 667


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 204 LFDSQLFMTMRVPQHVVIKGSISTRHIWK 118
           +FD+  +  +  P+H+  +G    RH+WK
Sbjct: 639 IFDNSGYSYLTTPKHLTPRGLEHVRHVWK 667


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 5/132 (3%)
 Frame = +3

Query: 375  KLTLDSSPPGVKKVLV-SEFIPMNYYVXXXXXXXXXXXXXXXXXXXXMANASTVHQENVG 551
            K  +++ PP +   LV +  +  N+Y                      A  ST    + G
Sbjct: 1147 KFKIENEPPSMSAELVYAPMVTRNFYSAPHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPG 1206

Query: 552  GTT----YFYSTNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGA 719
             TT     F S      +T S   S+  M  H  GP  P     G P   P  +  Y G 
Sbjct: 1207 LTTPMASIFQSPTMPPPHTPSPF-SAGPMSHHPMGP--PAYP--GTPGSFPPTTPTYPGM 1261

Query: 720  LPQPGPSTNKQG 755
             P+PGP+    G
Sbjct: 1262 TPRPGPNFGPPG 1273


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 5/132 (3%)
 Frame = +3

Query: 375  KLTLDSSPPGVKKVLV-SEFIPMNYYVXXXXXXXXXXXXXXXXXXXXMANASTVHQENVG 551
            K  +++ PP +   LV +  +  N+Y                      A  ST    + G
Sbjct: 1147 KFKIENEPPSMSAELVYAPMVTRNFYSAPHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPG 1206

Query: 552  GTT----YFYSTNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGA 719
             TT     F S      +T S   S+  M  H  GP  P     G P   P  +  Y G 
Sbjct: 1207 LTTPMASIFQSPTMPPPHTPSPF-SAGPMSHHPMGP--PAYP--GTPGSFPPTTPTYPGM 1261

Query: 720  LPQPGPSTNKQG 755
             P+PGP+    G
Sbjct: 1262 TPRPGPNFGPPG 1273


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 603  GLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQPGPSTNKQG 755
            G+N S S   HQ  P     N +  P+++ Y    +A   P PGP     G
Sbjct: 2473 GMNQSMS---HQAPPPYSSTNEMNRPLMNQYGGPHFAA--PNPGPLNRSSG 2518


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 585 SLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGALPQPGPSTNKQGLXA 764
           ++N+T+G N   S      G  +PC +   P  +SP+   ++   LP P PS++ + L A
Sbjct: 633 TINSTTGTNGIGSAG--AAGKIDPCAHLETP--ISPH---IFQSVLPSPTPSSSGRRLPA 685

Query: 765 TFYNPETIRSEI 800
              N   +   I
Sbjct: 686 LPINSAALLRRI 697


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 5/132 (3%)
 Frame = +3

Query: 375  KLTLDSSPPGVKKVLV-SEFIPMNYYVXXXXXXXXXXXXXXXXXXXXMANASTVHQENVG 551
            K  +++ PP +   LV +  +  N+Y                      A  ST    + G
Sbjct: 1147 KFKIENEPPSMSAELVYAPMVTRNFYSAPHRTFGTLAQKVVDKRPSQFAIPSTSTAAHPG 1206

Query: 552  GTT----YFYSTNSDSLNTTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPYASQMYAGA 719
             TT     F S      +T S   S+  M  H  GP  P     G P   P  +  Y G 
Sbjct: 1207 LTTPMASIFQSPTMPPPHTPSPF-SAGPMSHHPMGP--PAYP--GTPGSFPPTTPTYPGM 1261

Query: 720  LPQPGPSTNKQG 755
             P+PGP+    G
Sbjct: 1262 TPRPGPNFGPPG 1273


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -1

Query: 340 EVERLMYVTSFDSCGSPLGGAYGRNIDGSIISKLQCVCAVCLIYDSFRFTVIHDNESTPT 161
           E  + +Y TS     S +GG +G  +  SII+ +Q V  +   + +F F   H     P 
Sbjct: 67  EYVKEIYTTSIPGFMSQIGGQFGFFLGLSIITLIQMV--LYGFHSAFMFAKKHIQRKFPF 124

Query: 160 CR 155
           C+
Sbjct: 125 CK 126


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 594 TTSGLNSSASMDFHQPGPSEPCLNAVGPPMVSPY 695
           T + LN     D+ +P P+ P L A  PP V+ Y
Sbjct: 544 TKANLNIHQENDYFEPPPNAPRLFAQHPPEVNAY 577


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 213 IKQTAQTHC--SFEIMDPSIFLPYAPPNGLPQESK 311
           I+++  T C  S  I+ PS+F+P A P  +P++ K
Sbjct: 710 IQESKNTPCPVSQPILIPSVFVPVAVPEPIPEKPK 744


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,011,785
Number of Sequences: 27780
Number of extensions: 418731
Number of successful extensions: 1137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)