Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B11
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0407 - 3219980-3221278 31 0.79
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 30 2.4
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 3.2
01_01_0987 + 7803281-7803910,7803989-7804510 29 5.6
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 28 7.4
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 9.8
06_01_0287 - 2099008-2099023,2099441-2099472,2099776-2099814,209... 28 9.8
03_03_0094 + 14378953-14380728 28 9.8
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 9.8
>12_01_0407 - 3219980-3221278
Length = 432
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 407 FVNLGKIFDDHYHFHHRSLTKRSLTPAHEH 496
F LGK+ D H+H HHR K ++ EH
Sbjct: 56 FGELGKV-DHHHHHHHRQHAKNGMSDDEEH 84
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 368 LPVYGRPMLACNALVLFQCATEPTPGSRVREHRAPSHGHTHQLVLINIA--HTQNSLGRL 195
L V G P+ A +V F + +RE R+P+ G T I +A +T+ L L
Sbjct: 349 LAVKGDPVSAFGGIVAFNTTIDEDLAKEIREFRSPTDGQTRMFYEIVVAPGYTEKGLEIL 408
Query: 194 R 192
+
Sbjct: 409 K 409
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +3
Query: 318 KQH*GITRQHGPSIYRKEEKLPMPSPGTTASSILERYSTTTTIFIIVH*RRDPSRQPTSI 497
K++ G T ++ I +KLP+ + + A + E+ S + + + +PS++P+
Sbjct: 630 KKNNGATTENSSQISESAKKLPLTANKSQADTSTEKLSESDILAVASSQITEPSKKPSEN 689
Query: 498 TAD 506
TA+
Sbjct: 690 TAE 692
>01_01_0987 + 7803281-7803910,7803989-7804510
Length = 383
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 340 ANMGRPYTGRKRSCRCRRQGPRLRQSWKDIRRPLPFSSSFTNEEIPHASPRASRQIR 510
AN TG RR P L ++W +RRP P S + + A R++ +++
Sbjct: 311 ANTATTATGSDAVAAVRR--PYLSEAWYHVRRPAPRSPAAAAMRLQQADARSAAEMK 365
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 392 ARDHGFVNLGKIFDDHYHFHHRSLTKRSLTPAHEHHGRLEGDSRVRWAEQQKILSRKKRD 571
ARDH + +H+H HH S + + +P+ G GD ++W ++ SR +RD
Sbjct: 108 ARDHAHAH-----HNHHHHHHPSDSSDTASPSSNGAG-TGGDVLLQWGHNKR--SRCRRD 159
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 437 HYHFHHRSLTKRSLTPAHEHHGRLEG 514
H +FH + L + P H HH +L G
Sbjct: 133 HRNFHRKELDAAAAPPLHHHHHQLLG 158
>06_01_0287 -
2099008-2099023,2099441-2099472,2099776-2099814,
2099916-2099967,2100100-2100164,2100238-2100321,
2101144-2101191,2101272-2101392,2101809-2101911,
2102456-2102537,2102670-2102717,2102993-2103129,
2103225-2103313,2104206-2104327
Length = 345
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 383 DAVARDHGFVNLGKIFDDHYHFHHRSLTKRS 475
DA A VN G + DD+ HF R TKR+
Sbjct: 35 DAAASKLSCVNKGYMKDDYVHFFVRRTTKRA 65
>03_03_0094 + 14378953-14380728
Length = 591
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 329 GHYTPTWAVHIPEGREVADAVARDHGFVNLGK 424
GHYTP A H P R +A+ + +G +NL K
Sbjct: 85 GHYTPLPAGHSPLKRPIAEYLR--YGVINLDK 114
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 434 DHYHFHHRSLTKRSLTPAHEHHGRLEGDSRVRWAEQQKILSRKKR 568
DHY R RS++P H+ R + S R E+ S+ +R
Sbjct: 593 DHYSSSSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSPSKSRR 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,238,766
Number of Sequences: 37544
Number of extensions: 445952
Number of successful extensions: 1243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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