Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B10
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 27 2.5
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 27 3.4
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 3.4
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 27 3.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 4.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.9
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.8
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 7.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 7.8
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 7.8
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 346 YIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYK 516
Y + + +NN +N P +LN ++SK+ ++Q D V+ +KL +K
Sbjct: 411 YEKEFVEENNPNNIPEGILNVFPILSKDSHLQENQPTDILTDESVIAEDVKLEQVFK 467
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/96 (22%), Positives = 41/96 (42%)
Frame = +1
Query: 322 FTIKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKL 501
FT S+P+ + +++V L N V + K + E L +D G L +L
Sbjct: 593 FTDPSIPSLVERTIVPAELQNEITVSSASLRFLGK--VVARYRETLNLLDHGCSELHHRL 650
Query: 502 STNYKNKHKRKKQHNTKEHLHKFAFMTSEIHKKLWA 609
K +R++ + H++K + S +K W+
Sbjct: 651 ------KLQREEYERQQNHIYKLSDRISNFREKAWS 680
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 172 NKLQFKLWVLRFCLKIV 222
NKLQF++ +LR CL+IV
Sbjct: 115 NKLQFQISLLRCCLRIV 131
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 718 SSCFGLNDFNDIEITFHPVPSLLCSP-KIAITAEVSLLLNDYD 843
S G DFND++++ HP P SP K+ A+++L+ YD
Sbjct: 223 SYILGNIDFNDLDLSNHPYPRK--SPWKVVGNAKLALMTYLYD 263
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = +1
Query: 328 IKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENL 459
+ + A++V+ + + +L+NN ++LN +++SK+ Y L ENL
Sbjct: 1667 VSDLTAHLVKKIEEPDLENNVKLILN--LILSKD-YGFLLKENL 1707
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 400 LNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHNTKEHLHK 567
L KC+ I +Q I L S+ +Y + + SLK + Y+N ++ + + +L +
Sbjct: 137 LEKCLTIPLDQNILLVSDTRWYYAQDSILKSLK-TLGYQNVYESHLKERIEPNLEE 191
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +1
Query: 499 LSTNYKNKHKRKKQHNTKEHLHKFAFMTSEIHKKLWADRTADDIENIRIVPVVGSKLLKP 678
LS KNK K+K Q N HL F S I K + R + + P V + L P
Sbjct: 440 LSNLLKNKGKKKSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDEN--PKVNASLFFP 497
Query: 679 DI 684
+I
Sbjct: 498 EI 499
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 428 SLEITMHLFKTTAGLLSKLFFTSDCTMYAGTLLIVK*SIILA 303
+ +I++HL T L+ LFF+ ++ G L+V SI ++
Sbjct: 60 NFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVS 101
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 329 LKAYQRTSCNHL*KIIWIIIQLSF*TNALLSLKNSIYS 442
LK YQ+T K W I S +N +LKN+I++
Sbjct: 340 LKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLKNTIHA 377
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 568 IYVNVLWCCAVFYVCACFYNLCSILKKA 485
+ +N+ C F+ A F+ CS LKK+
Sbjct: 212 LIINIEEACTFFFESAHFFAQCSYLKKS 239
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 755 SISLKSFNPKHEDMLCNSF---SVTKPMSGLSNLDPTTGTILMFSISSAVLSAHNFLCIS 585
++SL S NP +ED+L + KP++ ++ + G F +S + +C+
Sbjct: 712 TVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYFDDASLSSADSCLICLE 771
Query: 584 EVIKANLCK 558
++C+
Sbjct: 772 TYTNGDICR 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,126
Number of Sequences: 5004
Number of extensions: 65294
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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