Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B08
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 369 e-102
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 169 3e-42
10_08_0036 + 14325793-14326457,14326610-14328035 31 1.5
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.9
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 30 2.6
04_03_0916 + 20794240-20794246,20794585-20796545 29 4.5
04_03_0914 + 20788103-20789642,20790036-20790529 29 5.9
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 5.9
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 28 7.8
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 369 bits (909), Expect = e-102
Identities = 170/229 (74%), Positives = 199/229 (86%)
Frame = +1
Query: 133 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 312
MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 313 RMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 492
R+ VGNKNGLL+P +TTD E QH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 493 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 672
LDK TEE++AD L VEVFRQTIAGN+LVGSY A++NRGGLVHP T+I+D DELS+LLQVP
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVP 180
Query: 673 LVAGTVNRGSDVVXAGMVVNDWCAFCGLDTTSTXISVIESVFKLNDAKP 819
LVAGTVNRGS+V+ AGM VNDW AFCG DTT+T +SVIESVFKL + +P
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQP 229
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 169 bits (410), Expect = 3e-42
Identities = 74/108 (68%), Positives = 94/108 (87%)
Frame = +1
Query: 496 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 675
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149
Query: 676 VAGTVNRGSDVVXAGMVVNDWCAFCGLDTTSTXISVIESVFKLNDAKP 819
AG++NRGS+VV AGM VNDW AFCG DTT+T +SV+ESVF+L D +P
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRLRDGRP 197
Score = 139 bits (336), Expect = 3e-33
Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Frame = +1
Query: 133 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 312
MA RV+FEN++E+GVF++LTN YC++ GG+ENF+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 313 RMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 456
RM VGNKNGLL+P +TTD E QH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 457 ACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYTALSNRGGLVHPKTNI 633
A ++ LVHP + + L+ L V + +I G+ +V + A+++ T
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTA 180
Query: 634 QDQDELSSLLQV 669
+ + S+ ++
Sbjct: 181 TELSVVESVFRL 192
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 30.7 bits (66), Expect = 1.5
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Frame = +1
Query: 202 CLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTESQH 381
CL A G + L I ++ ++ R IG T N + + V + D E+Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 382 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVEVFR 549
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE--- 523
Query: 550 QTIAGNVLVGSYTALSNRGGLVHPK 624
+A + + + + R G +HP+
Sbjct: 524 GMLAYDCVWKFCISSTPRSGCLHPR 548
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +1
Query: 73 ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEA 252
E+HH++ YII + K+ + ++ E F + + +C++A + N S+F+
Sbjct: 241 EAHHLI-YIIGWSLYHPVKLDGL--MHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQ 297
Query: 253 ELAETIPVIHASVGGCRIIGRMTVGN 330
++ T+ H C I+ +GN
Sbjct: 298 QVVGTLFTHHQK---CVIVDTQVIGN 320
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 547 RQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQV 669
R + A ++G A S+ GLVHP T+ Q +SS QV
Sbjct: 73 RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 286 SVGGCRIIGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIAC 462
S GGC + + + SS TD E+ HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 286 SVGGCRIIGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIACN 465
S GGC I + + SS TD E+ HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +1
Query: 70 EESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 249
E+ H +++ R K++ + E N VFS T+C + I S N + +
Sbjct: 475 EQQRHTFQFVSRNKLEVPVRHKKAPDALEMNTNSVVFSPKEQTHCNLEI-FSPNSKKIID 533
Query: 250 AELAETIPVIHA-SVGGCRIIGRMTVGNKNGLLVPSST 360
A E+ + +G C++ + ++ + PS T
Sbjct: 534 ASHYESYASLQQHPLGQCQVPNYWSAAGQSSFVHPSIT 571
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 28.3 bits (60), Expect = 7.8
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +1
Query: 307 IGRMTVGNKNGLLVPSSTTDTESQHIRNSLPENVK-LQRVEERLSALGNVIA--CNDYVA 477
I + + G +P + ++ S NS NV L+R E ++ V C D +
Sbjct: 121 IYKTSTSEGGGAQLPPPSINSSSLLPGNSFHSNVTVLKRAFEIATSQTQVEQPMCLDCMR 180
Query: 478 LVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDE 648
L+ +DK+ E++ AD EV Q + S+T LS+ G K I+++++
Sbjct: 181 LLSDKMDKEIEDVNADIKAYEVCLQHLEQE----SHTVLSD-AGFQKEKLKIEEEEK 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,462,423
Number of Sequences: 37544
Number of extensions: 477240
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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