Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_B08
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...   307   6e-84
AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical ...    29   5.3  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score =  307 bits (754), Expect = 6e-84
 Identities = 137/226 (60%), Positives = 186/226 (82%)
 Frame = +1

Query: 133 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 312
           MA+RV +E +N+VGVF  LTN+YCLV +GG++NFYS+ EAEL++ IPV+H S+   RI+G
Sbjct: 1   MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60

Query: 313 RMTVGNKNGLLVPSSTTDTESQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 492
           R+TVGN++GLLVP++TTD E QH+RNSLP+ V ++RV+ERLSALGNVIACND+VA+VH +
Sbjct: 61  RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120

Query: 493 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 672
           +  +TE+ L + L VEVFR ++A N LVGSY  LS+ G LV  +T  + Q E+++LLQ+P
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180

Query: 673 LVAGTVNRGSDVVXAGMVVNDWCAFCGLDTTSTXISVIESVFKLND 810
           +VAGT NRGS+++ AGMVVNDW AFCGLD+TST +SV+ES+FKL +
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGE 226


>AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical
           protein T09H2.1 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 397 PENVKLQRVE-ERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVL 573
           PE VK+ R E   L+     I+  D  +  + +   +  + +A  LNV +FRQT     +
Sbjct: 328 PEVVKIAREELVHLTGGHRSISLTDKTSTPYLNAVINEVQRIASILNVNIFRQTSEDTTV 387

Query: 574 ----VGSYTALSNRGGLVHPKTNI 633
               + + TAL+    L+H   N+
Sbjct: 388 NGQPIAAGTALTTHLSLIHTDENL 411


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 394 LPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 516
           +P++ K    +E+   +GN+  C D+  +++ D     +EI
Sbjct: 3   IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 477 CYIVVTGYDVTEGTKPFLHAL*FHVLRQTVSNVL*FC 367
           CY++ TG++ ++G    L  + F V + T +N+  FC
Sbjct: 362 CYVIRTGFNTSQG--KLLRTIMFGVKKATANNLETFC 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,956
Number of Sequences: 27780
Number of extensions: 422404
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)