Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_B04
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.36 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.36 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.47 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 703 HVDIPYNILXTDKPLFYTNNII 768
           ++DI +NI    K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 703 HVDIPYNILXTDKPLFYTNNII 768
           ++DI +NI    K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 697 PSHVDIPYNILXTDKPLFYTNNII 768
           P+  DI + I+   K LFYT N+I
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLI 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 703 HVDIPYNILXTDKPLFYTNNII 768
           ++DI +NI    K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 685 PARAPSHVDIPYNILXTDKPLFYTNNII 768
           P     + DI +NI    K LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 709 DIPYNILXTDKPLFYTNNII 768
           DI +NI    K LFYT N+I
Sbjct: 225 DIVFNITLRRKTLFYTVNLI 244


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 709 DIPYNILXTDKPLFYTNNII 768
           DI +NI    K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 709 DIPYNILXTDKPLFYTNNII 768
           DI Y I    +P+FY  N+I
Sbjct: 202 DITYEIRLRRRPMFYVFNLI 221


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 507 PEEGHGVXDITTRHIFSYKIVT 572
           P EG  + D   RHI    I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,285
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)