Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_B02
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.68 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 475 PGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPPDIP 302
           P DTI  G+S++++      +  PE    NP+    +   A   A   T G NPP++P
Sbjct: 246 PSDTIPPGASMARSD----PSQVPE---SNPSAAAAVAAAAVAAAANLTNGVNPPEVP 296


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = -3

Query: 490 SNPTPPGDTIDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPP 311
           S P PP    +L    S      I  P P      P+  P IP      A    P ++PP
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185

Query: 310 DIP 302
             P
Sbjct: 186 SAP 188


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 723 HIXHSVPCLRPKHNLP 676
           H+ HS+ C+R K N P
Sbjct: 546 HVSHSIECIRQKENDP 561


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 484  PTPPGDT--IDLGSSISKAAIFPIANPYPE*TSGNPTDRPTIPGKAATLAICFTPGRNPP 311
            P P  D   I + S+     I     P P+ +SG P+  P +P  ++ +     P   PP
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,033
Number of Sequences: 5004
Number of extensions: 72516
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)