Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B01
(769 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit ... 381 e-104
UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN full... 372 e-102
UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1; Di... 205 1e-51
UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Re... 200 2e-50
UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit ... 200 3e-50
UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit ... 199 7e-50
UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1; ... 190 4e-47
UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17; Asco... 175 1e-42
UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1; ... 162 8e-39
UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD CH... 160 4e-38
UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1; ... 155 1e-36
UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2... 150 4e-35
UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1; Gu... 144 3e-33
UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit ... 143 4e-33
UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative; ... 137 3e-31
UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putativ... 135 1e-30
UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putativ... 132 7e-30
UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2... 124 2e-27
UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1; Staphyloth... 123 6e-27
UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2; Cry... 116 5e-25
UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 116 5e-25
UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, wh... 112 8e-24
UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D; ... 111 1e-23
UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit ... 110 4e-23
UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D; ... 107 4e-22
UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gamb... 106 5e-22
UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D; ... 105 9e-22
UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D; ... 104 2e-21
UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II s... 103 4e-21
UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3; Thermoprot... 103 4e-21
UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia intes... 103 6e-21
UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putativ... 102 9e-21
UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, wh... 102 9e-21
UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4; ... 101 1e-20
UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D; ... 101 3e-20
UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D; ... 101 3e-20
UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III,... 100 5e-20
UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D; ... 100 5e-20
UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D; ... 99 6e-20
UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1; Dictyo... 100 8e-20
UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1; ... 100 8e-20
UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus... 99 1e-19
UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III ... 99 1e-19
UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1; ... 98 2e-19
UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 97 3e-19
UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 97 4e-19
UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,... 95 1e-18
UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative... 94 3e-18
UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10; Magnoliop... 94 4e-18
UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2; Ostreococc... 94 4e-18
UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2; ... 91 4e-17
UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III ... 91 4e-17
UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha subu... 90 6e-17
UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosae... 88 3e-16
UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III ... 86 1e-15
UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1; ... 85 1e-15
UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D; ... 85 2e-15
UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase, sub... 85 2e-15
UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha subu... 82 1e-14
UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3; Pezizomy... 82 2e-14
UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=... 80 5e-14
UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III s... 79 1e-13
UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunction... 77 5e-13
UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D; ... 71 2e-11
UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa sub... 71 3e-11
UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third la... 70 7e-11
UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza sativa... 69 1e-10
UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lambl... 69 1e-10
UniRef50_Q00813 Cluster: DNA-directed RNA polymerase subunit D; ... 64 5e-09
UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain; ... 58 3e-07
UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha subu... 55 2e-06
UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D; ... 54 3e-06
UniRef50_A2ER03 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 54 5e-06
UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase su... 40 0.051
UniRef50_Q74M82 Cluster: NEQ452; n=1; Nanoarchaeum equitans|Rep:... 39 0.16
UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella... 38 0.36
UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of str... 36 1.5
UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA... 33 5.9
UniRef50_Q4DRS4 Cluster: Myosin heavy chain MYA2-related, putati... 33 5.9
UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|R... 33 7.8
UniRef50_O51455 Cluster: DNA-directed RNA polymerase subunit alp... 33 7.8
>UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=36; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Homo sapiens (Human)
Length = 275
Score = 381 bits (937), Expect = e-104
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A130010H16
product:polymerase (RNA) II (DNA directed) polypeptide
C, full insert sequence; n=8; Mammalia|Rep: 16 days
neonate thymus cDNA, RIKEN full-length enriched library,
clone:A130010H16 product:polymerase (RNA) II (DNA
directed) polypeptide C, full insert sequence - Mus
musculus (Mouse)
Length = 332
Score = 372 bits (915), Expect = e-102
Identities = 161/226 (71%), Positives = 201/226 (88%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL++ENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPL SDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
V+ EYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 XVALEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 302
Score = 205 bits (500), Expect = 1e-51
Identities = 95/202 (47%), Positives = 142/202 (70%)
Frame = +1
Query: 106 QPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLA 285
QP + I E+ ++++ F++ +T++SVAN++RRV IAE PTM ID V+ E+N++VL DEF+A
Sbjct: 11 QPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFIA 70
Query: 286 HRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDP 465
HR+GLIPL+SD+ +DK Y+RDC C D C +CSVE L+VKCT+ + R VT++DL S +
Sbjct: 71 HRLGLIPLVSDN-IDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPRDVTSSDLLSQNS 129
Query: 466 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
V+PV+S+ + EI I+KLR+GQE+KLRA AKKG GKEHAKW+P+ +++
Sbjct: 130 AVIPVSSQVTSSN-----SEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQ 184
Query: 646 YDPDNIMRHTLYPKPDEWPKSE 711
+ P ++ + + K E
Sbjct: 185 FQPIIVLNQNRIDELTDQQKEE 206
>UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Rep:
ADL120Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 311
Score = 200 bits (489), Expect = 2e-50
Identities = 104/225 (46%), Positives = 145/225 (64%), Gaps = 5/225 (2%)
Frame = +1
Query: 109 PSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAH 288
P V I E + +NV F++ + +LS+ANS+RR+ IAE PT+AID V++E+N++VL+DEF++H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 289 RIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
R+GL+PL S D +D++ Y RDC C D C CSV TL E T +V DL+
Sbjct: 66 RLGLVPLQSKD-IDQLVYCRDCFCEDHCDRCSVLLTLHAVGESESTTNVYAKDLQI---- 120
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
V + ++ EA+ +LI KLRKGQEL+L+ AKKG KEHAKW+P A + FEY
Sbjct: 121 VSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGIAKEHAKWSPAAAIEFEY 180
Query: 649 DPDNIMRHTLY---PKPD-EWPKSEHTELNEDQYEAD-FNWEAKP 768
DP N +RHT Y P+ EWP S++ E + E D F++ AKP
Sbjct: 181 DPWNKLRHTDYWHEQDPEAEWPHSKNCEFEDPPNEDDQFDYSAKP 225
>UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit
RPB3-A; n=14; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB3-A - Arabidopsis thaliana
(Mouse-ear cress)
Length = 319
Score = 200 bits (488), Expect = 3e-50
Identities = 100/197 (50%), Positives = 135/197 (68%), Gaps = 3/197 (1%)
Frame = +1
Query: 97 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 276
Y P + I EL D+ KF + +T++S+AN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 6 YQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65
Query: 277 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 447
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L KC +QT VT+ D
Sbjct: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDVTSRD 124
Query: 448 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 627
L S+DP V PV D +D E I+I+KLR+GQELKLRA A+KG GK+HAKW+P
Sbjct: 125 LYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183
Query: 628 AGVSFEYDPDNIMRHTL 678
A V+F Y+PD I+ +
Sbjct: 184 ATVTFMYEPDIIINEDM 200
>UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 318
Score = 199 bits (485), Expect = 7e-50
Identities = 105/224 (46%), Positives = 142/224 (63%), Gaps = 5/224 (2%)
Frame = +1
Query: 109 PSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAH 288
P V I E S +NV F++ + +L++ANS+RRV IAE PT+AID V++E N+TVL+DEF+AH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 289 RIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
R+GLIPL S D ++++ YSRDC C D C +CSV TL E T +V + DL
Sbjct: 66 RLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI---- 120
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
V + R+ E + +LI KLRKGQELKL AKKG KEHAKW P A + FEY
Sbjct: 121 VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 180
Query: 649 DPDNIMRHTLY----PKPDEWPKSEHTELNEDQYEAD-FNWEAK 765
DP N ++HT Y EWP+S++ E + E D F+++A+
Sbjct: 181 DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQ 224
>UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 329
Score = 190 bits (462), Expect = 4e-47
Identities = 97/240 (40%), Positives = 137/240 (57%), Gaps = 18/240 (7%)
Frame = +1
Query: 100 ANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEF 279
+++P + + +L ++ F++E+ +LS ANS+RR+ IA+ PT+AID V++ N+TVL DE
Sbjct: 9 SSRPKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEM 68
Query: 280 LAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSS 459
LAHR+G++PL+S D + RDC C D C CSVE TL +CT VT+ DL S
Sbjct: 69 LAHRLGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 460 -----------DPRVVPVTSRHRD--EDQADYGEADEILIIKLRKGQELKLRAYAKKGFG 600
D P +H D G I+++K+ KGQEL +R A+KGF
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKGFA 188
Query: 601 KEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWPKSEHTELNEDQYE-ADFNWEAK 765
KEHAKW+P + V FEYDP N +RHT Y EWP+ + E E E A F++ K
Sbjct: 189 KEHAKWSPCSAVGFEYDPHNALRHTTYWYEFDAKQEWPEGPNAECEEPPQEGAPFDYNKK 248
>UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17;
Ascomycota|Rep: RNA polymerase II subunit 3 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 392
Score = 175 bits (426), Expect = 1e-42
Identities = 97/213 (45%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Frame = +1
Query: 145 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 324
V F + +L+ ANS+RRV +AE PTMAID V++E N++VL DEFLAHR+GLIPL S +
Sbjct: 80 VDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNC 139
Query: 325 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDED 504
+ Y+RDC C D C+ CSV TL +CT ++ V DL S R D
Sbjct: 140 DQDVEYTRDCDCEDHCARCSVTLTLHARCTGDEIMPVYARDLVVSGERANEWVGDPVITD 199
Query: 505 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY- 681
G LI KLR+GQELK+ AKKG KEHAKW PTA V FEYDP N +RH Y
Sbjct: 200 PEGKGP----LICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYW 255
Query: 682 --PKP-DEWPKSEHTEL-NEDQYEADFNWEAKP 768
P EWP S + + + F+++A+P
Sbjct: 256 YEEDPIKEWPVSANAAWEHAAPPDQPFDYDAQP 288
>UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 576
Score = 162 bits (394), Expect = 8e-39
Identities = 92/233 (39%), Positives = 126/233 (54%), Gaps = 5/233 (2%)
Frame = +1
Query: 85 QKMPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTV 264
+K + N+ + V F + +L+ ANS+RR +AE PT+AID V++E+N++V
Sbjct: 28 KKKIHPNEYKTTNQQAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSV 87
Query: 265 LSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTA 444
L DEF++HR+GLIPL S + + YSRDC C C+ C V L +CT E V
Sbjct: 88 LPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQARCTGEDIMKVYAR 147
Query: 445 DLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 624
DL R D G +I KLR+GQE+K+ AKKG KEHAKW P
Sbjct: 148 DLVIVGDRANEWVGNPVIMDAEGKGP----VICKLRRGQEIKMTCIAKKGIAKEHAKWAP 203
Query: 625 TAGVSFEYDPDNIMRHTLY---PKP-DEWPKSEHTELNED-QYEADFNWEAKP 768
TA V FEYDP N ++H Y P EWP S + E Q + F+++A+P
Sbjct: 204 TAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWETPAQPDMPFDYDAQP 256
>UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD
CHAIN; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II THIRD CHAIN - Encephalitozoon cuniculi
Length = 240
Score = 160 bits (388), Expect = 4e-38
Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 4/206 (1%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+ EL+ E+++F + +T + AN++RR+ I+E PT+AID V++E N+TVL DE LAHR+GL
Sbjct: 6 VEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 301 IPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPV 480
IP+ S +++Y +C C FCSECSV F +DV TD+ R V+T D+ + V+
Sbjct: 66 IPIYSKR---ELKYKEECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCDEEDVIIK 122
Query: 481 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDN 660
+ +I KL + Q LK R +KG GK HAKW+P + +SFEYD DN
Sbjct: 123 SGP---------------VITKLARDQGLKARCIGRKGVGKTHAKWSPVSAISFEYDKDN 167
Query: 661 IMRHTLY----PKPDEWPKSEHTELN 726
+ R T Y +EWP E N
Sbjct: 168 VRRETNYWFEESIEEEWPGVRQGEAN 193
>UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 330
Score = 155 bits (376), Expect = 1e-36
Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 8/226 (3%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V I +V F + + +LS+ANS+RRV +AE PT+AID +++ N++VL+DEF+AHR+
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVT---TADLKSSDP 465
GL+PL S ++ Y+RDC C +C CSV T+ KC E +V D+
Sbjct: 77 GLVPL-SARGASELVYARDCDCEQYCENCSVIITIHAKCESEDPNYVMKVYARDMVVDGR 135
Query: 466 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
RV D G +++ KLR+ QE+ +R AKKG KEHAKW P + FE
Sbjct: 136 RVNQSVGTPVITDPDGLG----VILFKLRRNQEVHIRCVAKKGIAKEHAKWCPATAIGFE 191
Query: 646 YDPDNIMRH-TLYPK---PDEWPKSEHTELNEDQYEAD-FNWEAKP 768
YDP N +RH L+ + +EWP SE+ E + F+++A P
Sbjct: 192 YDPHNKLRHLDLWYESNAKEEWPLSENAIREPPPQEGEPFDYDAVP 237
>UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2;
Cryptosporidium|Rep: Conjugation stage-specific protein
- Cryptosporidium hominis
Length = 355
Score = 150 bits (363), Expect = 4e-35
Identities = 79/191 (41%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Frame = +1
Query: 109 PSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAH 288
P ITEL+ +++F + +T+LS+AN++RR+ +AE PT+AID V + N++VL DEF+ H
Sbjct: 10 PKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFIVH 69
Query: 289 RIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKS-SDP 465
R+GLIPL S ++ D + C C + C++CSVE+ LDV C TR+VT D++ +
Sbjct: 70 RMGLIPLDSTNIRD-FNFKDRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQPVATS 128
Query: 466 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
+VP+ +D D D G + ILI KL GQ + +R A KG GK HAKW P + +F
Sbjct: 129 TLVPMPVPKKD-DSVD-GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATFT 186
Query: 646 YDPDNIMRHTL 678
+ D + ++L
Sbjct: 187 NEADVRINYSL 197
>UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase II -
Guillardia theta (Cryptomonas phi)
Length = 299
Score = 144 bits (348), Expect = 3e-33
Identities = 72/180 (40%), Positives = 113/180 (62%), Gaps = 2/180 (1%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+ ++SD +K + + ANS+RR+ + E PT+AID V +E N++ DEF+AHR+GL
Sbjct: 3 VEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRLGL 62
Query: 301 IPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPV 480
IP+ S++ D I+YSR+C C + C +CS+ FTLDV +E + +T++ +K S P+
Sbjct: 63 IPIFSEN-ADLIKYSRECDCENECEKCSILFTLDVH-ANETEKTITSSMVKCS-TACYPL 119
Query: 481 TSRHRDEDQADYGEADE--ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
+ + + D+ I+I KL GQ +KL+AY KKG GKEH+KWNP + + F + P
Sbjct: 120 KTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYP 179
>UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit 3;
n=2; Ostreococcus|Rep: DNA-directed RNA polymerase II
subunit 3 - Ostreococcus lucimarinus CCE9901
Length = 318
Score = 143 bits (347), Expect = 4e-33
Identities = 81/189 (42%), Positives = 116/189 (61%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
SV + L DE + F ++ ++S+AN++RR+ IA+ PT++ID V++ NS+VL DEFLAHR
Sbjct: 10 SVTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHR 69
Query: 292 IGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRV 471
+GLIPL S + ++ D ++ +E L+V+C +QTR VT+ DL S D RV
Sbjct: 70 LGLIPLDSTKASELVKPYEYTGDDDTATDVHLE--LNVRCQSDQTRDVTSDDLISHDERV 127
Query: 472 VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYD 651
PV+ A G ILI KLRK Q+L L+ A+KG GK+HAKW+P A F+Y
Sbjct: 128 KPVSFGGTGGGSAKSG---GILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAVFKYT 184
Query: 652 PDNIMRHTL 678
P + H L
Sbjct: 185 PLIDINHGL 193
>UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative;
n=2; Filobasidiella neoformans|Rep: RNA polymerase II
subunit 3, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 377
Score = 137 bits (331), Expect = 3e-31
Identities = 92/252 (36%), Positives = 132/252 (52%), Gaps = 30/252 (11%)
Frame = +1
Query: 103 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 282
NQP + + L++ + F + EL+ ANS+RRV +A+ PT+AID V N+T L+DE +
Sbjct: 23 NQPRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMI 82
Query: 283 AHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT---DEQTRHVTTADLK 453
AHR+GLIPLIS +V +RY+RDC C + C C V L V + EQ VT+ L+
Sbjct: 83 AHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKVTFSGNDGEQFMRVTSDMLE 142
Query: 454 -----SSDPRVVP------------VTSRHRDEDQAD-YGEAD----EILIIKLRKGQEL 567
P P + +RD + G+ + ILI K+ KGQE+
Sbjct: 143 VVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGKGQEI 202
Query: 568 KLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWPKSEHTELNEDQ 735
+ A KG K HAKW+P + V+FEYDP N +RHT + + EWP S +
Sbjct: 203 DVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTTHWFETDERAEWPLSSNAAFEPPP 262
Query: 736 YEAD-FNWEAKP 768
A+ F++ A P
Sbjct: 263 NPAEPFDYNAVP 274
>UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase ii,
putative - Theileria annulata
Length = 354
Score = 135 bits (327), Expect = 1e-30
Identities = 66/193 (34%), Positives = 117/193 (60%), Gaps = 6/193 (3%)
Frame = +1
Query: 94 PYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSD 273
P +PS+ + +L + + F++ ++++S AN++RRV ++E P++AI+ V + N++VL D
Sbjct: 5 PRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTSVLHD 64
Query: 274 EFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLK 453
E+++HR+GL+P I + + + C C D C++C+V++TLDV C D +R VT D+
Sbjct: 65 EYISHRLGLLP-IDSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCNDSNSRLVTHFDIV 123
Query: 454 SSDPRVVPVTSRH--RDEDQADY----GEADEILIIKLRKGQELKLRAYAKKGFGKEHAK 615
D + ++ +AD G D I I+KL++GQ + ++ A KG GK HAK
Sbjct: 124 PDDTHSKSIYGKNLPMPIPRADVTNFNGATDGIPIVKLKRGQSINMKLTASKGLGKFHAK 183
Query: 616 WNPTAGVSFEYDP 654
W A V+++ +P
Sbjct: 184 W-IVANVNYKMEP 195
>UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putative;
n=5; Plasmodium|Rep: DNA-directed RNA polymerase II,
putative - Plasmodium falciparum (isolate 3D7)
Length = 335
Score = 132 bits (320), Expect = 7e-30
Identities = 71/214 (33%), Positives = 123/214 (57%), Gaps = 2/214 (0%)
Frame = +1
Query: 103 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 282
N+ ++IT+L+ + + F + ++ +AN++RR+ ++E PT+AID V + N++ DEF+
Sbjct: 9 NKHQINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFI 68
Query: 283 AHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSD 462
AHR+GLIP+ S + V+ + C C + CS+C++++ ++VKC V+ D++S +
Sbjct: 69 AHRLGLIPIDSRN-VNNYEFREKCKCKETCSKCTIQYIIEVKCNHSNKIDVSHYDIESLE 127
Query: 463 PRV-VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 639
VP+ H +++ + I I+ L K Q L ++ A KG GK HAKW P A VS
Sbjct: 128 HEPNVPMPIPHGNKNSV---SENAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVS 183
Query: 640 FEYDPDNIMRHTLYPK-PDEWPKSEHTELNEDQY 738
+ D +++H L K +E LN+D Y
Sbjct: 184 YRIDHKVLIKHNLIDKLSNEHKLLLANNLNKDCY 217
>UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2;
Tetrahymena thermophila|Rep: Conjugation stage-specific
protein - Tetrahymena thermophila
Length = 310
Score = 124 bits (299), Expect = 2e-27
Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 9/190 (4%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+T L + +F +E+ ++S+ANS+RR+ +AE T+AI V++ N++ L DE++AHR+GL
Sbjct: 8 LTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGL 67
Query: 301 IPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDP----- 465
IPL S VD Y +C C C C++ F L V + VT+ DLK
Sbjct: 68 IPLNSAK-VDDYNYIWNCNCQGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHTDED 126
Query: 466 --RVVPVTSRHRDEDQADYGEADE--ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 633
R + V S RDE YG E I IIKL KGQ++ A+KG GK H+KWNP
Sbjct: 127 AVRPIKVYSILRDE----YGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCI 182
Query: 634 VSFEYDPDNI 663
+F +P+ I
Sbjct: 183 STFSVEPEII 192
>UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase, insert -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 280
Score = 123 bits (296), Expect = 6e-27
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 4/185 (2%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+++ E + ++ ++D L V NS+RR IAE PTMAID V NS+V DE++AHR+
Sbjct: 3 INVLEKTPLRLRLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRL 62
Query: 295 GLIPLISDDVVDKIRYSRDCMCVD----FCSECSVEFTLDVKCTDEQTRHVTTADLKSSD 462
GLIPL S+ +DK + +C F +C V+ L+ K + + + + DLK+SD
Sbjct: 63 GLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSD 122
Query: 463 PRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSF 642
P V PV D I II L K QE++L AYA+ G GKEHAKW+P + +
Sbjct: 123 PDVKPV--------------YDNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAH 168
Query: 643 EYDPD 657
+Y D
Sbjct: 169 KYIAD 173
>UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase I -
Cryptosporidium hominis
Length = 344
Score = 116 bits (280), Expect = 5e-25
Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ + EL + + F + + S+AN++RR+ + E PT+AI+ VQ+ N+ V+ DE LAHR+
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRH---VTTADLKSSDP 465
GLIP++ D + R + D + SV F L+VKCT + H +T+ + S D
Sbjct: 117 GLIPMLIDPNTIEFRNEDE----DLNEKNSVCFKLNVKCTKDDINHEKGITSKAIYSKDL 172
Query: 466 RVVPVTSRHRDE--DQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 639
+P++ R + D+ILI KLR GQ ++ Y +K G+ HAKW+P S
Sbjct: 173 VWIPLSDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTAS 232
Query: 640 FEYDPD 657
+ P+
Sbjct: 233 YRLLPE 238
>UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 322
Score = 116 bits (280), Expect = 5e-25
Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 15/189 (7%)
Frame = +1
Query: 103 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 282
+ P + +T + +++F + + AN++RRV IAE PT+A+D V+ N++ L DE++
Sbjct: 11 SSPQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYI 70
Query: 283 AHRIGLIPLISDDVVDKIRYSRDCMC----VDFCSECSVEFTLDVKCTDEQTR--HVTTA 444
AHR+ LIP +S+D DK Y C C + +C C+V +T+D C E VT+
Sbjct: 71 AHRLALIPFVSED-ADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSN 129
Query: 445 DLKSSDPR----VVPVTSRHRDEDQAD-YGEADE----ILIIKLRKGQELKLRAYAKKGF 597
DLK P + S H A + D + I KL GQ L+L AY +KG
Sbjct: 130 DLKLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGI 189
Query: 598 GKEHAKWNP 624
G+ HAKW+P
Sbjct: 190 GRNHAKWSP 198
>UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 308
Score = 112 bits (270), Expect = 8e-24
Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Frame = +1
Query: 103 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 282
+Q + I ELSDE KF E +LS+AN++RRV IAE P MAI +V + N++ LSDEFL
Sbjct: 10 SQHRIEILELSDEKCKFSFEG-DLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFL 68
Query: 283 AHRIGLIPLISDDVVDKI-RYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSS 459
A R+GLIPL+S K+ + D +D + V FTL K ++ +T+ L+
Sbjct: 69 AQRLGLIPLVSYAADSKMYDWEADADSID-DQKTKVVFTLRQKNLNDAPLEITSQHLEPE 127
Query: 460 DPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 639
+V + R G+ I I +L K Q + +R +A KGFGK HAKW P +
Sbjct: 128 FGQVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTPINIAT 187
Query: 640 FEYDPDNIMRHT 675
F ++ + H+
Sbjct: 188 FRHEAELNFDHS 199
>UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit D - Methanobacterium
thermoautotrophicum
Length = 264
Score = 111 bits (268), Expect = 1e-23
Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ + E +D + FVV + N++RR+ + E P +AI++V + N + DE LAHR+
Sbjct: 3 IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62
Query: 295 GLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRV 471
GL+PL +D + + ++ +C C ++CSECSV TL K V + DL S P V
Sbjct: 63 GLVPLAADPEFAESLKMPEECDCEEYCSECSVSLTLRKKGPGV----VYSGDLVSETPAV 118
Query: 472 VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYD 651
PV +I ++KL EL+L A A+ G G+EHAKW PT +++Y
Sbjct: 119 KPV--------------YPDIPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYY 164
Query: 652 P 654
P
Sbjct: 165 P 165
>UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit 3,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 3, putative - Trypanosoma cruzi
Length = 363
Score = 110 bits (264), Expect = 4e-23
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Frame = +1
Query: 139 ENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD 318
E ++F + + + S AN +RRV +AE P + I+ V + N++VL DE +AHRIGL+PL S
Sbjct: 43 ETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPDEMIAHRIGLVPLYSM 102
Query: 319 DVVDKIRYSRDCMC-VDFCSECSVEFTLDVKC-TDEQTRHVTTADLKSSDPRVVPVTSRH 492
+++Y+RDC+C C EC + L V C +++ + V LK D V PV+S
Sbjct: 103 K-ARRMQYARDCLCGGSGCGECQINGELKVSCPSNKHSLQVFMDSLKIDDEEVYPVSS-- 159
Query: 493 RDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRH 672
E + ++ L + QEL LR +K K HAK+ P A V+ Y D ++
Sbjct: 160 ---------EEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVATVAMRYASDIVLNP 210
Query: 673 TLYPKPD 693
+ K D
Sbjct: 211 DGFAKLD 217
>UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit D - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 281
Score = 107 bits (256), Expect = 4e-22
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 1/185 (0%)
Frame = +1
Query: 145 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 324
++ VE L + N++RR ++ P MA+D V++ N+TVL DE +AHR+GLIPL S +
Sbjct: 14 IRLYVEGFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGLIPLTSKEA 73
Query: 325 VDKIRYSRDCMCVDFCS-ECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDE 501
+ K + +C + C V L+V+ + R V + DL++SDP V PV
Sbjct: 74 LQKYKRPEECEKAELGDPSCYVVLRLEVETGPREERIVYSGDLETSDPDVRPV------- 126
Query: 502 DQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY 681
D + I+ + Q L+L+AYA+ G+G+EHAKW P + + Y P I+ L
Sbjct: 127 -------YDNMPIVVMAPDQRLRLQAYARLGYGREHAKWMPVSVAAHRYLP--ILEFNLD 177
Query: 682 PKPDE 696
DE
Sbjct: 178 EMSDE 182
>UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012965 - Anopheles gambiae
str. PEST
Length = 252
Score = 106 bits (255), Expect = 5e-22
Identities = 65/187 (34%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Frame = +1
Query: 136 DEN-VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLI 312
DEN ++F + ++AN RR+ ++E P+MAI+ V + N++++ DE LAHR+GLIPL
Sbjct: 14 DENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHRLGLIPLR 73
Query: 313 SDDVVDKIRYSRDCMCVDFCSEC-SVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSR 489
+D + + + + D S ++EF L VKCT + + S + VP+ ++
Sbjct: 74 ADPRMFEYKANE----TDPPSALDTLEFELKVKCTRKNKDSTENHSIYSGQIKWVPIGNQ 129
Query: 490 HRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 666
+A G D+ILI K+R G E ++ +A KG GK+HAK++P A VS+ PD +
Sbjct: 130 ATIYTEAAVGPIDDDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKL 189
Query: 667 RHTLYPK 687
Y K
Sbjct: 190 NRPAYVK 196
>UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit D - Pyrobaculum aerophilum
Length = 260
Score = 105 bits (253), Expect = 9e-22
Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 1/184 (0%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+ E + +K VVE S+ NS+RRV I+E P MAID V + N++V+ DE LAHR+GL
Sbjct: 6 VVERGEYFLKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGL 65
Query: 301 IPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVP 477
IPL + + + DC+ + SECS TL V + T + + DL S P VVP
Sbjct: 66 IPLTTP--LQSLPPYEDCVSGLADPSECSTRLTLQVTAEGDTT--IYSGDLASDRPDVVP 121
Query: 478 VTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 657
V ++D I I+KL KGQ + L AYAK G K+HAKW A S+ Y P
Sbjct: 122 V---YKD-----------IPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPK 166
Query: 658 NIMR 669
+++
Sbjct: 167 VVVK 170
>UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit D - Aeropyrum pernix
Length = 286
Score = 104 bits (250), Expect = 2e-21
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
SV + EL V+ + + N++RR +++ PTMA+D+ + N+T + DE +AHR
Sbjct: 8 SVEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHR 67
Query: 292 IGLIPLISDDVVDKIRYSRDCMCVDFCSE-CSVEFTL--DVKCTDEQTRHVTTADLKSSD 462
+GL+ L S++ V+K R +C + E C VE +L +V E R++T DL SD
Sbjct: 68 LGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSISD 127
Query: 463 PRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSF 642
P+V PV Y E +I + GQ + ++A+A+ G GKEH KW+P +
Sbjct: 128 PQVKPV-----------YPETP---LIYVAPGQRIHVQAFARLGRGKEHTKWSPASLSVL 173
Query: 643 EYDP 654
Y P
Sbjct: 174 RYTP 177
>UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 283
Score = 103 bits (248), Expect = 4e-21
Identities = 68/184 (36%), Positives = 95/184 (51%), Gaps = 1/184 (0%)
Frame = +1
Query: 97 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 276
Y QP + E +E + F +E T+ S+ N +RRV +AETPT+AI V++ ANS+ L DE
Sbjct: 6 YNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSSYLCDE 65
Query: 277 FLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKS 456
F+AHR+GLIP+ S + +F L + Q VT+ DL S
Sbjct: 66 FIAHRLGLIPIDSTQI------------HNFEDTDDAILELKEENNSNQLVVVTSNDLVS 113
Query: 457 -SDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 633
D RV PV ++ + D I+I +L Q + + Y KKG GK HAKWNPT
Sbjct: 114 IGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQ 164
Query: 634 VSFE 645
F+
Sbjct: 165 CVFQ 168
>UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3;
Thermoproteaceae|Rep: RNA polymerase, insert -
Caldivirga maquilingensis IC-167
Length = 305
Score = 103 bits (248), Expect = 4e-21
Identities = 70/182 (38%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
SV + + SD+ +KFVVE + S+ NS+RR+ I + P +AID V + N+TV+ DE LAHR
Sbjct: 6 SVKVLQYSDDYLKFVVEGVKPSLINSLRRILITDVPVLAIDRVIVLDNTTVMYDEVLAHR 65
Query: 292 IGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
+ +IPL ++ + + KI D + VD S C V + L +K D Q V DL DP
Sbjct: 66 LSMIPLKTNLEKLPKIEECEDEL-VD-PSLCQVRYQLSIKAND-QVVSVYAKDLIPDDPD 122
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
PV + LI+K+ KGQ L + AYAK G ++HAKW S+ Y
Sbjct: 123 FAPV--------------YPDTLIVKMSKGQVLSIEAYAKLGRARDHAKWQACL-ASYYY 167
Query: 649 DP 654
P
Sbjct: 168 YP 169
>UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia
intestinalis|Rep: GLP_301_28021_29001 - Giardia lamblia
ATCC 50803
Length = 326
Score = 103 bits (246), Expect = 6e-21
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = +1
Query: 109 PSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAH 288
PS+ I +D ++ + ++S N +RR A+ PT+AID V+ NST L++EF+AH
Sbjct: 3 PSIKILSKTDLKLELEISGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 289 RIGLIPLISDDVVDKIRYSRDC----MCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKS 456
R+GLIPL + + I Y C C EC+ + TL++ + R VT D+K
Sbjct: 63 RLGLIPLRTAGSLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDKDIK- 121
Query: 457 SDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 636
D + S + E E I I+KL G+ + YA+K GK HAKW P A V
Sbjct: 122 FDHGGISTLSNYL-ESSFGAAETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAACV 180
>UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Babesia bovis|Rep: DNA-directed RNA polymerase II,
putative - Babesia bovis
Length = 382
Score = 102 bits (245), Expect = 9e-21
Identities = 47/115 (40%), Positives = 77/115 (66%)
Frame = +1
Query: 106 QPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLA 285
+PS+ I L+ + F++ + +++ ANS+RR+ ++E P++AI+ V + N++VL DE++A
Sbjct: 9 RPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTSVLHDEYIA 68
Query: 286 HRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
HR+GL+P+ S Y C C D CS C+VE++LDVKC D+ TR VT D+
Sbjct: 69 HRLGLLPIESSS-ARNFEYRDKCTCSDKCSRCTVEYSLDVKCMDD-TRVVTHYDI 121
Score = 41.5 bits (93), Expect = 0.022
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 532 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
I I+KL++GQ L L+ A KG GK HAKW A V+++ +P
Sbjct: 195 IPIVKLKRGQCLSLKMTATKGLGKFHAKW-MVANVAYKMEP 234
>UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 316
Score = 102 bits (245), Expect = 9e-21
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
++I +DE + F + + + +ANS+RR+ IAE PTMAI VQ+ N++V+ DE LAHR+
Sbjct: 33 INILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDEVLAHRL 92
Query: 295 GLIPLISDDVV-----DKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSS 459
GLIP+I+D + D+ Y+ + +DF E + K D + T + SS
Sbjct: 93 GLIPIIADPLQFVEKDDQEEYN-ELNSIDFTLYAKCEKKPNSKQDDPIEQQYTNTTVHSS 151
Query: 460 DPRVVPVTSRHRDEDQADYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 636
P + + I+I KLR+ QEL LR +KG GK HAKW+P
Sbjct: 152 SLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTA 211
Query: 637 SFEYDPDNIMRHTL 678
++ P +++ L
Sbjct: 212 FYKLMPSITIKNQL 225
>UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4;
Methanomicrobiales|Rep: RNA polymerase, insert precursor
- Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1)
Length = 276
Score = 101 bits (243), Expect = 1e-20
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ + L + KF + +S AN +RR I+E PT+AI+ V++ N++VL DE LAHR+
Sbjct: 3 IAFSRLDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHRL 62
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRV 471
GLIPL +D + + + +C C D C C+ +TL V E + V ++DL DP
Sbjct: 63 GLIPLRTD--LKRYKPRSECTCEDAGCPVCTATYTLSV----EGPKTVYSSDLIPQDPDA 116
Query: 472 VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYD 651
P AD ++I II+L + Q+L L A A G GKEHAKW T ++
Sbjct: 117 AP----------AD----EKIPIIELARDQKLVLEAQAIVGTGKEHAKWQATTACGYKNY 162
Query: 652 P 654
P
Sbjct: 163 P 163
>UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit D - Sulfolobus solfataricus
Length = 265
Score = 101 bits (241), Expect = 3e-20
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 1/182 (0%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
S+++ D + V E L N++RR + P MA+D V N++ L DE LAHR
Sbjct: 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHR 61
Query: 292 IGLIPLISDDVVDKIRYSRDCM-CVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
+ LIP +S++ +D R+ +C+ C + C +C + ++ + +E R + + D+KS DP
Sbjct: 62 LALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNE-PRMIYSKDIKSEDPS 120
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
VVP++ +I I+ L Q++ L A + G+GKEHAK+ P + Y
Sbjct: 121 VVPISG--------------DIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRY 166
Query: 649 DP 654
P
Sbjct: 167 YP 168
>UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit D - Methanosarcina mazei (Methanosarcina frisia)
Length = 266
Score = 101 bits (241), Expect = 3e-20
Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 2/180 (1%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V I ELSD + KFV+ ++ AN +RR IA+ PT+AI++V L N++VL DE LA R+
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 295 GLIPLISDDVVDKIRYSRDC-MC-VDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
LIPL++D ++ +C +C + C C V TL E V + DL SSDP+
Sbjct: 65 SLIPLVTD--IETYMPQAECEVCGGEGCPACEVSLTLSA----EGPGTVYSRDLISSDPK 118
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
+ P AD I I++L+KGQ+L L A A G+G++ KW AGV+ Y
Sbjct: 119 IQP----------AD----PNIPIVELKKGQKLVLEAIAHMGYGRDSVKWQ--AGVACGY 162
>UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III, 40
kDa polypeptide, putative; n=3; Piroplasmida|Rep:
DNA-directed RNA polymerases I and III, 40 kDa
polypeptide, putative - Theileria annulata
Length = 329
Score = 100 bits (239), Expect = 5e-20
Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Frame = +1
Query: 169 ELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVVDKIRYS 345
++S AN++RR+ I+E PT+A++ VQ+ N+ V+ DE LAHR+GLIP I D+ + S
Sbjct: 53 DVSFANALRRILISEVPTLAVETVQIYQNTGVVQDELLAHRLGLIPFSIDPDLFNFKSSS 112
Query: 346 RDCMCVDFCSEC----SVEFTLDVKCTD-EQTRHVTTADLKSSDPRVVPVTSRHR--DED 504
++ C C E SV F L VK +Q+ +++ + S+D + VP+++ +D
Sbjct: 113 KNNHCFADCEEINDKNSVCFKLKVKYNKFDQSEYLS---IYSNDLKWVPLSNNQEIMFKD 169
Query: 505 QADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
+ILI KL GQE+ L Y +KG GK H+KW+P + +++ P
Sbjct: 170 NPPKPVYGDILITKLGPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMP 219
>UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit D - Pyrococcus furiosus
Length = 261
Score = 100 bits (239), Expect = 5e-20
Identities = 63/170 (37%), Positives = 91/170 (53%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V I E ++++KFV++ +S AN++RR + E PT A+D V+ N + L DE +AHR+
Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
+IPL + VD R+ D + +D ++T+ + E V + DLKS DP V
Sbjct: 66 AMIPLTTP--VD--RFELDALELD-------DYTVTLSLEAEGPGIVYSGDLKSDDPDVK 114
Query: 475 PVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 624
PV I I+KL +GQ L AYAK G GK+HAKW P
Sbjct: 115 PVN--------------PNIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP 150
>UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit D - Archaeoglobus fulgidus
Length = 264
Score = 99 bits (238), Expect = 6e-20
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 1/187 (0%)
Frame = +1
Query: 109 PSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAH 288
P + I E D +KF++++ ++ANS RR AE P MA+D+V + NS+ DE +AH
Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62
Query: 289 RIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDP 465
R+ ++P+ +D+ +C C + C C + F L+V E + V + D S DP
Sbjct: 63 RLAMLPI--KTYLDRFNMQSECSCGGEGCPNCQISFRLNV----EGPKVVYSGDFISDDP 116
Query: 466 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
VV D I +++L +GQ+L L A A+ G G+EHAK+ P + ++
Sbjct: 117 DVV--------------FAIDNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYK 162
Query: 646 YDPDNIM 666
P+ ++
Sbjct: 163 IIPEIVV 169
>UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase III
subunit - Dictyostelium discoideum AX4
Length = 345
Score = 99.5 bits (237), Expect = 8e-20
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 4/184 (2%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
++I S + F + + +AN++RR+ I+E PTMAI+ V + N+++L DE LAHR+
Sbjct: 61 INILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRL 120
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-TDEQTRHVTTADLKSSDPRV 471
G+IP+ VD +++ ++ +E ++ F L VKC D T + S
Sbjct: 121 GMIPI----KVDPRKFNFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIW 176
Query: 472 VPVTSRHR---DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSF 642
VP + +E+ D+I I+KLR GQ + ++ Y +K G+EH KW+P S+
Sbjct: 177 VPTQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASY 236
Query: 643 EYDP 654
P
Sbjct: 237 RLQP 240
>UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 320
Score = 99.5 bits (237), Expect = 8e-20
Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 12/211 (5%)
Frame = +1
Query: 100 ANQP-SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 276
ANQ V +T LSD + +F + + S+AN++RRV +AE PT+AI+ V + N++++ DE
Sbjct: 89 ANQNLKVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDE 148
Query: 277 FLAHRIGLIPL-ISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQT--RHVTTAD 447
L+HR+GL+PL I+ D V +R D + +V F L KC ++ R T D
Sbjct: 149 VLSHRLGLVPLAINPDKV-AMRMPGD----EADDSNTVVFHLKAKCERNRSAARGETDPD 203
Query: 448 LKSSDPRVVPVTSR--HRDEDQADYGEA------DEILIIKLRKGQELKLRAYAKKGFGK 603
V R + + D+ ++ D+ILI KLR GQEL L + +KG GK
Sbjct: 204 KLYIGHNVYSEQLRWDAKGGQEKDFADSPPRPVQDKILIAKLRPGQELDLELHCEKGIGK 263
Query: 604 EHAKWNPTAGVSFEYDPDNIMRHTLYPKPDE 696
+HAK++P A ++ P L P PDE
Sbjct: 264 DHAKFSPVATATYRLLPH---IQLLQPIPDE 291
>UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: RNA polymerase,
insert - Candidatus Nitrosopumilus maritimus SCM1
Length = 221
Score = 99.1 bits (236), Expect = 1e-19
Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 2/184 (1%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
S+ + ++ + ++ L AN++RRV + P A+D V + NS+VL DE LAHR
Sbjct: 12 SLEVISKDNQKIALKLKGVPLQYANALRRVCLNGVPVFAVDTVDIIENSSVLPDEGLAHR 71
Query: 292 IGLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTLDVKCTDEQTRHVTTADLKSSDP 465
+GLIPL +D + + C C CS C V LD +D TR V + +L S D
Sbjct: 72 LGLIPLKTD--LSRFNEPSKCECQSETGCSNCKVMLVLDSGDSD-VTRTVLSNELSSEDD 128
Query: 466 RVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
+ P+ +D+I I++L GQ +K+ YA+ G G EHAKWN +A VS
Sbjct: 129 SITPI--------------SDKIPIVELAPGQRIKVECYARLGRGTEHAKWN-SANVSML 173
Query: 646 YDPD 657
+ D
Sbjct: 174 TETD 177
>UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=45; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC1 - Homo sapiens
(Human)
Length = 346
Score = 98.7 bits (235), Expect = 1e-19
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 223 AKFSPVATASYRLLPD 238
>UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 350
Score = 98.3 bits (234), Expect = 2e-19
Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+ L+ ++F + + S+AN++RR IAE PT+AI+ V + N++++ DE L HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 301 IPLISDDVVDKIR-------YSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSS 459
+PL D + R + D + D C +D TD + + +++ S
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHDTVVFDLRVRCDRRPNVDRSETDPKKMYF-DSNVYSG 169
Query: 460 DPRVVPV-TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 636
+ VP + + + +A D+IL++KLR GQ++ L +A+KG G +HAK++P A
Sbjct: 170 MLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATA 229
Query: 637 SFEYDPDNIMR 669
S+ P I+R
Sbjct: 230 SYRLLPHIILR 240
>UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 336
Score = 97.5 bits (232), Expect = 3e-19
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Frame = +1
Query: 136 DENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLIS 315
++ ++F + + +AN++RR+ IAE PTMAI V + N++++ DE LAHR+GLIP+ +
Sbjct: 55 NKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIYA 114
Query: 316 DDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT-DEQTRHVTTADLKSSDP-----RVVP 477
D + + + D ++ + S++FTL +KC+ EQ ++ + ADL++ P +
Sbjct: 115 DPRLFEEKQEED----EYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLENAIV 170
Query: 478 VTSRHRDEDQADYGEA----------DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 627
+ + Q + + D I++ KLR+ QE+ +KG GK HAKW+P
Sbjct: 171 YSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKWSPV 230
Query: 628 AGVSFEYDPD 657
+ P+
Sbjct: 231 CTAYYRLMPE 240
>UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 305
Score = 97.1 bits (231), Expect = 4e-19
Identities = 57/180 (31%), Positives = 98/180 (54%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ ITE S E ++F + + + S+AN++RR+ +E PTMA+ + L+ N +V DEF+AHR+
Sbjct: 32 IRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHRL 91
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GL+PL D + ++ + + S+ FTLDV+ E +V + D++ +
Sbjct: 92 GLVPLEVDP--EMFEFAGE----ELDERNSLRFTLDVRNESEGVLNVYSDDIRWN----- 140
Query: 475 PVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
PV S+ E D + +L+ +L +GQ++ K GK HAKW+P ++ P
Sbjct: 141 PVGSQR--EIFRDVKFSSRVLMFRLARGQKISAELVCTKNVGKVHAKWSPVCPATYRLMP 198
>UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,
RpoD; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit D, RpoD -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 274
Score = 95.5 bits (227), Expect = 1e-18
Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ + +D+ + F+V D E+ N++RR + P +AI+ V + N + + +E LAHR+
Sbjct: 3 IEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAHRL 62
Query: 295 GLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRV 471
GL PL+S+ D ++ + D D+ SV F+L +E + V + DL SSD ++
Sbjct: 63 GLTPLVSNMDAIEGLPLPGD---DDYEENNSVMFSL----KEEGPKVVYSKDLISSDSKI 115
Query: 472 VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYD 651
PV D I ++KL++G++L + A AK G+GKEHAKW PT ++
Sbjct: 116 KPV--------------YDTIPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQY 161
Query: 652 PD 657
P+
Sbjct: 162 PE 163
>UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative;
n=7; Plasmodium|Rep: DNA-directed RNA polymerase I,
putative - Plasmodium berghei
Length = 334
Score = 94.3 bits (224), Expect = 3e-18
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 12/199 (6%)
Frame = +1
Query: 133 SDENVKFV-VEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL 309
++EN+ + +++ +S+AN++RR+ I+E PT+AI+ V + N+ V++DE L HR+GLIP
Sbjct: 55 NEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRLGLIPF 114
Query: 310 ISD-DVVD-KIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTAD---LKSSDPRVV 474
D D+++ K + + FC F L VKC + + + S D +
Sbjct: 115 KFDADLINFKDTHEKYNNLNCFC------FKLHVKCNSINNNKIGNENYQCIYSKDLKWC 168
Query: 475 PVTSRHRDEDQADYGEA--DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE- 645
P+ + + +++ + D ILI KL GQE++L + +KG GK HAKW+P ++
Sbjct: 169 PLNEEQKIKFESNPPKVVDDNILITKLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKM 228
Query: 646 ---YDPDNIMRHTLYPKPD 693
+D D + T Y K D
Sbjct: 229 FPTFDFDVHEKFTNYEKKD 247
>UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10;
Magnoliophyta|Rep: RNA polymerase subunit - Arabidopsis
thaliana (Mouse-ear cress)
Length = 385
Score = 93.9 bits (223), Expect = 4e-18
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + L++ ++ F + +AN+ RR+ +AE P+MAI+ V + N++V+ DE LAHR+
Sbjct: 83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-TDEQTRHVTTADLK------ 453
GLIP+ +D + + D + ++ F L VKC + R V T++LK
Sbjct: 143 GLIPIAADPRLFEYLSEND----QPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGS 198
Query: 454 -----SSDPRVVPVT---SRHRDEDQADYGE------ADEILIIKLRKGQELKLRAYAKK 591
S P T H + ++ E +ILI KL GQE++L A+A K
Sbjct: 199 ELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVK 258
Query: 592 GFGKEHAKWNPTAGVSFEYDPDNIM 666
G GK HAKW+P A + P+ ++
Sbjct: 259 GIGKTHAKWSPVATAWYRMLPEVVL 283
>UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2;
Ostreococcus|Rep: RNA polymerase subunit - Ostreococcus
tauri
Length = 382
Score = 93.9 bits (223), Expect = 4e-18
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
IT+ S+E V F +E + AN+ RR+ I+E PTMAI+ V + N++V+ DE AHR+GL
Sbjct: 75 ITDASEERVVFEMEGCSAAFANAFRRIIISEVPTMAIEKVYMINNTSVVPDEVFAHRLGL 134
Query: 301 IPLISDDVVDKIRYSRD------CMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLK-SS 459
+P+ +D + R D + + + C E D + R V + L+
Sbjct: 135 VPIKADPARFEYRGPNDLANETNTIVLSLHARCHRERLDDGSLGEVVNRSVYSNALQWCP 194
Query: 460 DPRVVPVTSRHRDED-----QADYGEA------DEILIIKLRKGQELKLRAYAKKGFGKE 606
D +P R + D + +GE D+IL++KL GQE++L + KG G+E
Sbjct: 195 DGSQLPEEERAKYSDFKRSQRESFGEEELGCVHDDILLVKLAPGQEIELECHCVKGIGQE 254
Query: 607 HAKWNPTAGVSFEYDPD 657
H+KW+P + P+
Sbjct: 255 HSKWSPVGTCWYRMVPE 271
>UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 366
Score = 90.6 bits (215), Expect = 4e-17
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Frame = +1
Query: 97 YANQPSVHITELSDENV--KFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
Y +Q V + SD+ + +F + E +AN++RRV IAE PTMA++ + L N++V+
Sbjct: 50 YCDQIQVAMVNESDDGMTLEFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQ 109
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVE----------FTLDVKCTDE 420
DE L HR+GL+PL D + + + +C E F ++V CT
Sbjct: 110 DEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKN 169
Query: 421 QTRHVTTADLK---------SSDPRVVPVTSRHRD--EDQADYGEADEILIIKLRKGQEL 567
+ T D K S VP+ + E+ +D+IL+ KLR GQE+
Sbjct: 170 RNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDILVAKLRPGQEI 229
Query: 568 KLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
+ +A KG G++HAK++P A S+ P
Sbjct: 230 EASCHAVKGIGRDHAKFSPVATASYRLLP 258
>UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=16; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III subunit RPAC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 335
Score = 90.6 bits (215), Expect = 4e-17
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V+I+ L F + + + S+AN+ RR+ I+E P++A ++V N++V+ DE LAHRI
Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 295 GLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTLDVKCTDEQTRHVTTADLKS--SD 462
GL+PL D D + + + D F E ++ +L+VKCT + D K ++
Sbjct: 102 GLVPLKVDP--DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNN 159
Query: 463 PRVVPVTSRHRDEDQADYGEAD--------EILIIKLRKGQELKLRAYAKKGFGKEHAKW 618
V + + + AD +IL+ KLR GQE+ L+A+ G G +HAK+
Sbjct: 160 AHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKF 219
Query: 619 NPTAGVSFEYDPD-NIMR 669
+P + S+ P NI++
Sbjct: 220 SPVSTASYRLLPQINILQ 237
>UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=4; Trypanosoma|Rep: DNA-directed
RNA polymerase, alpha subunit, putative - Trypanosoma
cruzi
Length = 393
Score = 89.8 bits (213), Expect = 6e-17
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 5/201 (2%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
+P + T S E + F VE +AN RR+ + E P +A D + +E N +V+
Sbjct: 85 VPTSESSPTTSTTRSVETMTFDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVP 144
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DE LAHRIGL+P+ V K+++ + V F + L + E R + +
Sbjct: 145 DELLAHRIGLVPIAGP--VLKMQFVTESNQVGF-DALDPQRVLVFELAAEGRRDAKSTSV 201
Query: 451 KSSDPRVVPVTSRH-----RDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAK 615
S D + P+ + DED+ D I++ KL GQ LKLRA A KG G HAK
Sbjct: 202 YSGDLKWKPLPGQEAWATGADEDRVFLVHPD-IILTKLGPGQRLKLRAIALKGIGGVHAK 260
Query: 616 WNPTAGVSFEYDPDNIMRHTL 678
W P + +E +R +
Sbjct: 261 WTPVSVCFYELKTSIYLREPI 281
>UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosaeta
thermophila PT|Rep: RNA polymerase, insert -
Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 264
Score = 87.8 bits (208), Expect = 3e-16
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
+V + EL D+ V+F++ + AN++RR IAE P +AID + + N++VL DE +A R
Sbjct: 2 NVELIELRDDRVRFLLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFDEQIALR 61
Query: 292 IGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLDVKCTDEQTRHVTTADLKSSDPR 468
+GL+P+ +DD + +C C C C ++F L T E V + D+K SDP
Sbjct: 62 LGLVPIRADD-LSVYSTPDECQCGGIGCPGCRIDFML----TAEGPATVHSRDIKFSDPS 116
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKW 618
V +A + D I ++ L +G++L + +A GKEHAKW
Sbjct: 117 V-----------RAAF---DNIPLVVLGEGEKLVIEGFATLRTGKEHAKW 152
>UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III 40
kDa polypeptide; n=9; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III 40 kDa
polypeptide - Ajellomyces capsulatus NAm1
Length = 380
Score = 85.8 bits (203), Expect = 1e-15
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 19/188 (10%)
Frame = +1
Query: 151 FVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLI-SDDVV 327
F + + ++AN+ RR+ IAE P++AI+ V + N++V+ DE LAHR+GL+PL S + +
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 328 DKIRYSRDCM--CVDFCSEC----SVEFTLDVKCT---------DEQTRHVTTADLKSSD 462
+ +R+ R D SE +V L+V+CT D+ + A + + D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 463 PRVVPVTSRH---RDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 633
PV + ++ D +IL+ KLR GQ++ + + KG G +HAK++P A
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVAT 245
Query: 634 VSFEYDPD 657
S+ PD
Sbjct: 246 ASYRLLPD 253
>UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1;
Thermofilum pendens Hrk 5|Rep: RNA polymerase, insert
precursor - Thermofilum pendens (strain Hrk 5)
Length = 283
Score = 85.4 bits (202), Expect = 1e-15
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 1/169 (0%)
Frame = +1
Query: 151 FVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVV 327
F++ +T + AN++RR I+E P +AID V + N++ L DE +AHR+ L+PL I +
Sbjct: 11 FMLRNTTPAFANALRRALISEVPILAIDEVIVTENTSALWDEMIAHRLALVPLKIDPETY 70
Query: 328 DKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQ 507
D +R + + V F+L+ + E+ R V + L+ P+ E
Sbjct: 71 DALR-----DLYEQGKDPQVIFSLEEE-AGERPRTVLSGHLRFEGIEGAPLP----PESA 120
Query: 508 ADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
+ I I+KL KGQ++ L A A+ G G++HAKW P V ++Y P
Sbjct: 121 GIEPVSKNIPILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKP 169
>UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit D - Methanopyrus kandleri
Length = 275
Score = 85.0 bits (201), Expect = 2e-15
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 1/174 (0%)
Frame = +1
Query: 139 ENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD 318
E F++E+T N++RR PT+ I+ V + N T + DE LAHR+GLIPL D
Sbjct: 17 ERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEMLAHRLGLIPLRVD 76
Query: 319 DVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHR 495
D +D+ C C C +C V L+V E V DLK P V P
Sbjct: 77 D-IDQFELPDLCDCGGKGCEKCQVRAELEV----EGPTKVYARDLKFDHPDVEPA----- 126
Query: 496 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 657
+ LI ++ + Q ++L A G G EHAKW P + V ++ P+
Sbjct: 127 ---------FPDTLITEVGEDQRIRLEVIAVPGLGLEHAKWKPVSAVGYKGLPE 171
>UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase,
subunit D; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit D - Ignicoccus
hospitalis KIN4/I
Length = 283
Score = 84.6 bits (200), Expect = 2e-15
Identities = 49/172 (28%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
+ + E + +++ + + L+V N++RR + P MA+D++ ++ N + L +E LAHR+
Sbjct: 3 IEVLEETPTSIRLLAKGYPLAVLNAIRRAALELAPKMAVDFIAVDRNDSTLFNEVLAHRL 62
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-TDEQTRHVTT-ADLKSSDPR 468
+IPL S++ ++ RY+ + C EC+ E KC D + +V D + +
Sbjct: 63 AMIPLRSEEALE--RYAPP----EACMECTPEEAEADKCVVDGKPCYVRLYLDASAEGKQ 116
Query: 469 VVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 624
++ + + ED+ + I ++ L Q++K+ AYA+ G G+EHAKW P
Sbjct: 117 IIVYSKDLKSEDEDVRPVYENIPVVPLIGDQKVKVIAYARLGRGREHAKWMP 168
>UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha
subunit/40 kD subunit; n=1; Cenarchaeum symbiosum|Rep:
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
- Cenarchaeum symbiosum
Length = 212
Score = 82.2 bits (194), Expect = 1e-14
Identities = 56/170 (32%), Positives = 87/170 (51%)
Frame = +1
Query: 112 SVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHR 291
S+ + + + + L AN++RR+ + P A+D V + N++VL+DE LAHR
Sbjct: 3 SLEVLSKDERKISIRLRGVPLQYANALRRICLNGVPVFAVDTVDIVENTSVLADEGLAHR 62
Query: 292 IGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRV 471
+GLIPL +D + + + D + V TLD +TR V +++L S D V
Sbjct: 63 LGLIPLRTDS--SEFKNLAEIDPDDPINR--VMLTLD-SGEAAETRTVLSSELVSEDSSV 117
Query: 472 VPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWN 621
P+ +D I I++L GQ +K+ AYA+ G G EHAKWN
Sbjct: 118 KPI--------------SDTIPIVELAPGQRIKVEAYARLGRGTEHAKWN 153
>UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3;
Pezizomycotina|Rep: RNA polymerase I and III -
Aspergillus oryzae
Length = 373
Score = 81.8 bits (193), Expect = 2e-14
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 18/194 (9%)
Frame = +1
Query: 151 FVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLI-SDDVV 327
F + + S+AN+ RR+ +AE P++AI++V + N++V+ DE LA R+GLIPL S D +
Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125
Query: 328 DKIRYSR-----DCMCVDFCSECSVEFTLDVKCTDEQTRHVT---------TADLKSSDP 465
+ +R+ + D D ++ LD++CT T A + + D
Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185
Query: 466 RVVPVTSRHR--DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 639
PV + + + A +ILI KLR GQ++ L + KG G +HAK++P A S
Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATAS 245
Query: 640 FEYDPD-NIMRHTL 678
+ PD I+R L
Sbjct: 246 YRLLPDIQILRPIL 259
>UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=1;
Eimeria tenella|Rep: rna polymerase ii b3 subunit -
Eimeria tenella
Length = 147
Score = 80.2 bits (189), Expect = 5e-14
Identities = 34/84 (40%), Positives = 61/84 (72%)
Frame = +1
Query: 73 RFKKQKMPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEA 252
+ ++Q+ Q ++ +TELS++ V+F + + + S+AN++RRV I+E PT+AID V +
Sbjct: 30 QLQQQQQQQLMQAAIRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFE 89
Query: 253 NSTVLSDEFLAHRIGLIPLISDDV 324
N++VL DE++ HR+GL+P+ S +V
Sbjct: 90 NTSVLHDEYIVHRLGLLPIDSSNV 113
>UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III
subunit Rpc40, putative; n=5; Pezizomycotina|Rep:
DNA-directed RNA polymerase I and III subunit Rpc40,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 374
Score = 79.0 bits (186), Expect = 1e-13
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Frame = +1
Query: 169 ELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLI-SDDVVDKIRYS 345
+ S+AN+ RR+ +AE PT+AI++V + N++V+ DE LA R+GLIPL S + ++ +R+
Sbjct: 72 DASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWF 131
Query: 346 RDCMCVDFCSEC------SVEFTLDVKCT---------DEQTRHVTTADLKSSDPRVVPV 480
+ D S ++ LDV+CT D+ + A + + D PV
Sbjct: 132 KKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKDITFHPV 191
Query: 481 TSRHR--DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
+ + D A +ILI KLR GQ++ + + KG G +HAK++P A ++ P
Sbjct: 192 GRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMP 251
Query: 655 D 657
D
Sbjct: 252 D 252
>UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunctional
aminoacyl-tRNA synthetase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to bifunctional aminoacyl-tRNA
synthetase - Nasonia vitripennis
Length = 1549
Score = 77.0 bits (181), Expect = 5e-13
Identities = 49/183 (26%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Frame = +1
Query: 145 VKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 324
++F + ++AN+ RR+ ++E P+MAI+ V + N++++ DE LAHR+GL+PL +D
Sbjct: 1261 LEFDIIGCSAALANAYRRIMLSEVPSMAIEKVYMINNTSLIQDEVLAHRLGLLPLKADPR 1320
Query: 325 VDKIRYSRDCMCVDFCSECSVEFTLDVKC-----TDEQTRHVTTA----DLKSSDPRVVP 477
+ + + + ++ + + C + +R ++ S D + P
Sbjct: 1321 LFEYPSKTTADEEEVSDQDTLRYEIKAICKWNPHAPKDSRRPDDIYCGNNVYSKDIKWNP 1380
Query: 478 VTSRHR--DEDQADYGE-ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
+ ++ + + +G AD+ILI K+R QE+ +A KG GK+HAK++P A ++
Sbjct: 1381 IGRQNELYPDGEKQFGMIADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRL 1440
Query: 649 DPD 657
P+
Sbjct: 1441 LPE 1443
>UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit D - Thermoplasma volcanium
Length = 271
Score = 71.3 bits (167), Expect = 2e-11
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQL--------EAN----S 258
V I +LSD+ + F ++ S AN++RR I + P +AI+ V E N S
Sbjct: 3 VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62
Query: 259 TVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLDVKCTDEQTRHV 435
L DE +AHR+GLIPL +D + + C C CS C+V ++++ V
Sbjct: 63 LPLFDEMVAHRLGLIPLKTDL---SLNFRDQCSCGGKGCSLCTVTYSIN----KIGPASV 115
Query: 436 TTADLKS-SDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHA 612
+ D+++ S P +VPV D D I I+KL Q + + A A G KEHA
Sbjct: 116 MSGDIQAISHPDLVPV-----DPD---------IPIVKLGAKQAILITAEAILGTAKEHA 161
Query: 613 KWNPTAGVSFEYDPDNIMRHTLYPKPDEWPK 705
KW T+GV+++Y + + L+ ++W K
Sbjct: 162 KWQVTSGVAYKYHREFEVNKKLF---EDWAK 189
>UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa
subunit; n=1; Bigelowiella natans|Rep: DNA-directed RNA
polymerase I 40kDa subunit - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 293
Score = 70.9 bits (166), Expect = 3e-11
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Frame = +1
Query: 175 SVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVV--DKIRYS 345
S+ N+MRR+ ++E T+AI+ + + N+++L+D LAHRIGLIPL I+ + K+
Sbjct: 50 SIINAMRRILLSEIATIAIEDIYVFENTSILNDNILAHRIGLIPLRINPKQIQFQKMYCL 109
Query: 346 RD-----CMCVDFCSEC-SVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQ 507
+D + + + C S T D+ C D R L RV + + +
Sbjct: 110 KDQTNSVVLILKNSNFCNSFRLTKDIFCKDFSYRRY--GSLIPHQSRVY-FSIKQDIVKK 166
Query: 508 ADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM-RHTLYP 684
+ ++ILI KL+ Q L L A+ KKG+ +H+K++P A + Y I+ ++ +Y
Sbjct: 167 NSFLTFEDILITKLKPKQLLFLEAHCKKGYSTQHSKYSPVAAAWYLYYSTTILIKNLIYY 226
Query: 685 K 687
K
Sbjct: 227 K 227
>UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third
largest subunit; n=1; Bigelowiella natans|Rep:
DNA-directed RNA polymerase II third largest subunit -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 291
Score = 69.7 bits (163), Expect = 7e-11
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Frame = +1
Query: 169 ELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSR 348
+ S ++++ + T+A D + + N++ +DEF+AHRIGLIPLIS+ + + + +
Sbjct: 25 DTSFTHAIKNIVENSIITLAADTIMIFENTSNFNDEFIAHRIGLIPLISNTLYEACNWEK 84
Query: 349 DCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSD--PRVVPVTSRHRD----EDQA 510
+ V F ++ C + + V+T D + + RV P+ + D E++
Sbjct: 85 NPKIV---------FDINKFCKNNSSCFVSTKDYRCNTFRNRVTPIGYSYYDKINQENKF 135
Query: 511 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKW 618
+ ILI+KL++ Q L ++ KKG G +H KW
Sbjct: 136 NLVNYSHILILKLKQSQVLSMKITLKKGKGSDHTKW 171
>UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza
sativa|Rep: Os02g0723600 protein - Oryza sativa subsp.
japonica (Rice)
Length = 327
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/68 (45%), Positives = 52/68 (76%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V I+ L++++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE L+HR+
Sbjct: 72 VEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRL 131
Query: 295 GLIPLISD 318
GLIPL +D
Sbjct: 132 GLIPLDAD 139
>UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_305_30255_31307 - Giardia lamblia
ATCC 50803
Length = 350
Score = 68.9 bits (161), Expect = 1e-10
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Frame = +1
Query: 178 VANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM 357
+AN++RR+ + E PTMAID V + NS++++DE +HR+GL+P+ D + Y D
Sbjct: 54 IANTIRRIILDEVPTMAIDTVVVHENSSIIADEIFSHRLGLVPMNIDPRL--FEYHEDGD 111
Query: 358 CVDFCSECSVEFTLDVKCTDEQTRHVTTAD-----LKSSDPRVVPVTSRH----RDEDQA 510
+ +V F LDV + + + S D VP+ + + E +A
Sbjct: 112 KIH--ERNTVVFKLDVTAPATYSSSFNDEEPGWFYVYSRDIYWVPIGGQKDWLLKQEVRA 169
Query: 511 DYGEA-----DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 624
D +IL+ KL GQ + Y KG G+ HAK+ P
Sbjct: 170 DMSSLPAPLDPDILLAKLAPGQRIFCEIYCHKGIGRMHAKFQP 212
>UniRef50_Q00813 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit D - Haloarcula marismortui (Halobacterium
marismortui)
Length = 259
Score = 63.7 bits (148), Expect = 5e-09
Identities = 55/178 (30%), Positives = 86/178 (48%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V E + + +V + AN +RR +A+ PT +ID V++ N++V+ +E + R+
Sbjct: 7 VEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLRL 66
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GL+PL +D +D DF E E TL + T + ++DL SSDP V
Sbjct: 67 GLVPLTTD--LD-----------DF--EIGDEVTLSLSVDGPSTAY--SSDLVSSDPMV- 108
Query: 475 PVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 648
+ AD D I II L++GQ L++ A A G+EHAK V + +
Sbjct: 109 ---------EAAD----DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYRH 153
>UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain;
n=1; Guillardia theta|Rep: DNA-directed RNA polymerase
40k chain - Guillardia theta (Cryptomonas phi)
Length = 339
Score = 57.6 bits (133), Expect = 3e-07
Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Frame = +1
Query: 178 VANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM 357
+ NS+RR +A+ T++I+ V + NSTV DE ++HR+GL+P+ + +I +R
Sbjct: 73 IINSIRRTIMADVKTLSIEKVYIYKNSTVFGDEIISHRLGLVPIFISTELLRIYENR--- 129
Query: 358 CVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRD--EDQADYGEADE 531
++ ++ LD+ + + T + S ++ S D ++Q + +
Sbjct: 130 ---AKNDPNIIINLDI---NNNIYNKTKISIFSEMLNLM-YKSIEFDLYKNQLIFPVYRD 182
Query: 532 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 654
ILI+K+ GQE+ + G HAK++P + + +P
Sbjct: 183 ILILKINPGQEIHCECHCLINSGLNHAKFSPVGTIFYRMEP 223
>UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase, alpha subunit, putative - Leishmania major
Length = 442
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 139 ENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL 309
E + F +++ +AN +RRV E PT+A D V +E N + + DE L+HR+GL+P+
Sbjct: 118 ERMSFEMQNVSPPIANLLRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPV 174
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +1
Query: 496 DEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 645
++D A + +IL+ KL GQ +KL+A A KGFG HAKW+P + +E
Sbjct: 262 EDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYE 311
>UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit D - Methanococcus jannaschii
Length = 191
Score = 54.4 bits (125), Expect = 3e-06
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +1
Query: 172 LSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL 309
+S +N++RR+ I+E PT AI+ V + NS+ + DE LAHR+GLIP+
Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPI 69
Score = 39.1 bits (87), Expect = 0.12
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 532 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNI 663
I I+KL KGQ +++ A G GK HAKW P V + D +
Sbjct: 109 IPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAVYKQIADDEV 152
>UniRef50_A2ER03 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 341
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Frame = +1
Query: 121 ITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGL 300
+ E ++ + F + + S AN++RR +A P++AI+ V + N+ V+ DE L HR+GL
Sbjct: 38 LAETGEDRLVFDLTNAPASHANALRRTLLASVPSIAIELVGMLDNTGVMPDEVLCHRLGL 97
Query: 301 IPLISD 318
IP+ +D
Sbjct: 98 IPINAD 103
>UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase subunit - Emiliania huxleyi
virus 86
Length = 229
Score = 40.3 bits (90), Expect = 0.051
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +1
Query: 175 SVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD 318
++ N++RR + + +A V + N++V E LAHRIGL+P+IS+
Sbjct: 23 TMVNTIRRTLMLDLAELAPTDVTIHKNTSVYPCELLAHRIGLVPIISE 70
>UniRef50_Q74M82 Cluster: NEQ452; n=1; Nanoarchaeum equitans|Rep:
NEQ452 - Nanoarchaeum equitans
Length = 227
Score = 38.7 bits (86), Expect = 0.16
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = +1
Query: 181 ANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPL 309
AN +RR+ + E P+MAI+ V + N+ V +E+ A+R+GLIP+
Sbjct: 14 ANLLRRLIMEEAPSMAIEDVYVHQNN-VYWNEWFANRLGLIPI 55
>UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella
neoformans|Rep: Helicase, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 397
Score = 37.5 bits (83), Expect = 0.36
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = +1
Query: 514 YGEADEILIIKLRKGQELKLR-----AYAKKGFGKEHAKWNPTAG--VSFEYDPDNIMRH 672
Y A+++ + G L++R K G+GKE+A +NP G V +Y P+++++H
Sbjct: 287 YAAAEQLATMPPLPGVPLQIRNAPTQLMKKLGYGKEYA-YNPDYGHPVHNDYLPESLLQH 345
Query: 673 TLYPKPDEWPKSEHTELNEDQYEADFNWE 759
+ + S+H DQ+EAD W+
Sbjct: 346 SSHSHDP----SQHILKTADQFEADKKWD 370
>UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome C of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 419
Score = 35.5 bits (78), Expect = 1.5
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = +1
Query: 361 VDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILI 540
V + VE+ + +K + + T + PR T+ + +A Y + ++
Sbjct: 280 VQIVGKSRVEYDIVIKANFPKQQTATNVVINIPTPRNAAKTTINASNGKAKYDSSTNQIV 339
Query: 541 IKLRK---GQELKLRAYAKKGFGKEHAKWN-PTAGVSFE 645
K+ + G E+ LRA A+ F E WN P + FE
Sbjct: 340 WKVSRISGGSEISLRATAELTFTTEKTPWNKPPISMDFE 378
>UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA20163-PA - Nasonia vitripennis
Length = 843
Score = 33.5 bits (73), Expect = 5.9
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +1
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAK--KGFGKEHAKWNP 624
K ++ + ++ + E ++++ +K K +L L+A ++ + K H NP
Sbjct: 389 KPNERKTQEKQNKKQTEKDGKNNLSEDVEDVKALKKSKLMLQAKSRLYEKLAKSHNNMNP 448
Query: 625 TAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNW 756
V FE+ PD+ H+ +E K+ NE Y++D W
Sbjct: 449 NFLVDFEHKPDS-SDHS----EEENSKNNGVNENESDYDSDDGW 487
>UniRef50_Q4DRS4 Cluster: Myosin heavy chain MYA2-related, putative;
n=2; Trypanosoma cruzi|Rep: Myosin heavy chain
MYA2-related, putative - Trypanosoma cruzi
Length = 1072
Score = 33.5 bits (73), Expect = 5.9
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = +1
Query: 232 DWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSEC------SVEF 393
DW+ L+ N T + H IGL+ + + K + + +C++ +E F
Sbjct: 420 DWLVLKINQTTNREAVTTHWIGLLDIFGFENFQKNSFEQ--LCINLANEALQGHYNQHIF 477
Query: 394 TLDV-KCTDE--QTRHVTTADLK 453
TLD+ +C +E T HVT AD K
Sbjct: 478 TLDMQECQNEGIDTTHVTFADNK 500
>UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|Rep:
CG15828-PB, isoform B - Drosophila melanogaster (Fruit
fly)
Length = 4374
Score = 33.1 bits (72), Expect = 7.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 589 KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 711
K FGK HA W+ + FEY+ + HTL+ W K+E
Sbjct: 1671 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1707
>UniRef50_O51455 Cluster: DNA-directed RNA polymerase subunit alpha;
n=3; Borrelia burgdorferi group|Rep: DNA-directed RNA
polymerase subunit alpha - Borrelia burgdorferi (Lyme
disease spirochete)
Length = 345
Score = 33.1 bits (72), Expect = 7.8
Identities = 14/55 (25%), Positives = 34/55 (61%)
Frame = +1
Query: 172 LSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKI 336
+++ N++RRV ++ AI +++++N+ S + ++ LIP +S+D ++ I
Sbjct: 42 ITIGNTLRRVLLSSIEGYAITAMRVQSNNKDSSSKVVSSEFDLIPGVSEDTLEII 96
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,904,415
Number of Sequences: 1657284
Number of extensions: 15038165
Number of successful extensions: 38679
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 37193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38582
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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