Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B01
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 181 9e-47
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 97 2e-21
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.9
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 3.9
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 5.2
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.0
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 9.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.0
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 181 bits (441), Expect = 9e-47
Identities = 100/231 (43%), Positives = 143/231 (61%), Gaps = 9/231 (3%)
Frame = +1
Query: 103 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 282
++ + I +S +V FV+ +T L+VANS+RRV +AE PT+AID V++ N++V+ DEFL
Sbjct: 3 SETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62
Query: 283 AHRIGLIPLISDDVVDK----IRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
AHR+G+IPL S ++ + + Y+R+C C +C +CSVE L+ KCT E T + DL
Sbjct: 63 AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
VV S AD ++ LI KLRK QE+ LR AKKG KEHAKW+PT+
Sbjct: 123 ------VVSSNSSLGHPILAD-PKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
Query: 631 GVSFEYDPDNIMRHTLY----PKPDEWPKSEHTELNEDQYEAD-FNWEAKP 768
V+FEYDP N ++HT Y EWPKS++ + E E + FN++ +P
Sbjct: 176 AVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEP 226
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 97.5 bits (232), Expect = 2e-21
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V IT L E + F + + S+AN+ RR+ IAE PT+A ++V + N++++ DE L+HRI
Sbjct: 48 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107
Query: 295 GLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-------TDEQ--TRHVTTA 444
GL+P+ +D D+ ++ +V F+L+ KC TDE+ R +
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNS 167
Query: 445 DLKSSDPRVVPV-TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWN 621
++ S D P R D +I++ KLR GQE+ L A+A G G++HAK++
Sbjct: 168 EVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFS 227
Query: 622 PTAGVSFEYDP 654
P A S+ P
Sbjct: 228 PVATASYRLLP 238
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 383 LHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 243
L S QKST ++ +L+ + + +G+ RC +S L + L N
Sbjct: 74 LSSNQKSTSKSNQMIKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.9
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -3
Query: 479 TGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQ---KSTHMQSREYLILSTTSSDM 309
+ TT SL S + L SS+ +S +S+ S ST+ + S TSS +
Sbjct: 122 SSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Query: 308 SGMRPMRCAKNSSLKTVELASNCTQSMAIVGVSA 207
S A +SSL + L S + + +S+
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSS 215
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 3.9
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +1
Query: 88 KMPYANQPSVHITELSDENVKFVVED 165
+ P A+ P+++ + + EN++ ++ED
Sbjct: 83 RQPIADVPAIYFVQPTQENIELIIED 108
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 456 RFQISSCYMSCLFICA 409
RF +S CY++CL C+
Sbjct: 181 RFPVSECYLACLKACS 196
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 184 NSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMC 360
NS+ V A+ P+M ID + L N + + + L P I++ D V D
Sbjct: 182 NSLVCVSFAQNPSMLIDSIDLVRNMPDFTKK--TDMLNLFPRIAEHDAVLSTSLHADPQF 239
Query: 361 VDFCSEC 381
+DF C
Sbjct: 240 LDFLESC 246
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 744 RLILIFIKFSVLAFGP-FIWFWI*RMSHYIIRVIFKGHTSSWIPF 613
R +L+ + ++ + P I+FWI ++ I IF H SW F
Sbjct: 1491 RTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSWTDF 1535
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 697 IHLVLD-ITYVSLYYQGHIQRTHQQLDSILHALSQN 593
I+++ D ITYV Y + +Q+T++ L ++L L N
Sbjct: 384 INILQDSITYVKNYMEESLQKTYKPLPNLLQYLILN 419
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 642 KGHTSSWIPFCML 604
KGH SWI FC L
Sbjct: 1486 KGHAHSWIGFCRL 1498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,218
Number of Sequences: 5004
Number of extensions: 67731
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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