Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B01
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0053 + 873918-874411,875255-875492,875682-875702 188 6e-48
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 91 1e-18
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885... 69 3e-12
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 30 2.3
08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790 29 5.4
02_05_0447 + 29096853-29097033,29097812-29098146,29098651-290987... 29 5.4
08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554 28 9.4
>09_01_0053 + 873918-874411,875255-875492,875682-875702
Length = 250
Score = 188 bits (457), Expect = 6e-48
Identities = 100/200 (50%), Positives = 133/200 (66%), Gaps = 13/200 (6%)
Frame = +1
Query: 97 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 276
Y P V I EL D+ KF + DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 10 YQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDE 69
Query: 277 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTD-EQTRHVTTA 444
F+AHR+GLIPL S + +R+SRDC D C CSVEF L + TD +QT VT+
Sbjct: 70 FIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSN 128
Query: 445 DLKSSDPRVVPVTSRHRDE---------DQADYGEADEILIIKLRKGQELKLRAYAKKGF 597
DL+S+DP+V PV + D A + ILI+KLR+GQEL+LRA A+KG
Sbjct: 129 DLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGI 188
Query: 598 GKEHAKWNPTAGVSFEYDPD 657
GK+HAKW+P A V+F Y+P+
Sbjct: 189 GKDHAKWSPAATVTFMYEPE 208
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 90.6 bits (215), Expect = 1e-18
Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 19/207 (9%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + L++++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE L+HR+
Sbjct: 72 VVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHRL 131
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR-HVTTADLK-----S 456
GLIPL +D + + D ++ + L V C R V + DL+ S
Sbjct: 132 GLIPLDADPRLFEYISENDVP----TERNTIVYKLHVSCKKGSPRLTVKSGDLEWLPEGS 187
Query: 457 SDPRVVPVTSRHRDEDQADYGEAD-------------EILIIKLRKGQELKLRAYAKKGF 597
P P S + + + ++ +I I +L GQ ++L +A KG
Sbjct: 188 QLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAVKGI 247
Query: 598 GKEHAKWNPTAGVSFEYDPDNIMRHTL 678
GK HAKW+P A + P+ ++R +
Sbjct: 248 GKVHAKWSPVATAWYRMLPEVVLREEI 274
>02_05_0574 -
30086264-30086367,30087653-30087746,30088293-30088555,
30089122-30089202,30089293-30089422,30089545-30089730,
30090013-30090138
Length = 327
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/68 (45%), Positives = 52/68 (76%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V I+ L++++++F + + S+AN+ RR+ IAE PTMAI+ V + N++V++DE L+HR+
Sbjct: 72 VEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHRL 131
Query: 295 GLIPLISD 318
GLIPL +D
Sbjct: 132 GLIPLDAD 139
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = -3
Query: 419 SSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 243
S++H+ + N+ L + L+ +S+ +SG P+ AK +L T++L+ N
Sbjct: 270 STLHYLNLANNNLEGPIPDNISSCMNLISLNLSSNYLSGAIPIELAKMKNLDTLDLSCN 328
>08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790
Length = 317
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 280 RIHRSKRWN*LLTVPNRWPLLVFQR*IRVSYCLLRLIRYLPQRILH 143
R+ +R+ L +P RW L Q+ IR C +L R LP+ L+
Sbjct: 6 RLRHQRRYYRLRLLPPRWGSLRPQQYIRALTCNCKLSRSLPKHTLN 51
>02_05_0447 +
29096853-29097033,29097812-29098146,29098651-29098782,
29098870-29099142,29099295-29099477
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 627 SWIPFCMLFPKTFFCICPK 571
SW+ LFP F C CPK
Sbjct: 229 SWLRLAALFPLHFVCACPK 247
>08_02_0895 + 22351418-22351553,22352991-22353112,22353228-22353554
Length = 194
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 760 LPS*SPPHTDLH*VQCARFWAIHLVLDITYVSLYYQGHIQRT 635
LPS S H LH + CA W + +T L+ GHI T
Sbjct: 60 LPSGSVSH--LHRIPCAETWHFYKGEPLTVFELHDDGHIDLT 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,369,114
Number of Sequences: 37544
Number of extensions: 409758
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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