Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_B01
(769 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 381 e-105
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 381 e-105
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 381 e-105
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 381 e-105
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 381 e-105
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 381 e-105
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 377 e-104
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 377 e-104
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 377 e-104
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 99 2e-20
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 99 2e-20
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 99 2e-20
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 99 2e-20
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 99 2e-20
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 64 7e-10
AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein. 50 1e-05
AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein. 33 1.1
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 381 bits (937), Expect = e-105
Identities = 165/226 (73%), Positives = 204/226 (90%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +RHT+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 377 bits (927), Expect = e-104
Identities = 164/226 (72%), Positives = 203/226 (89%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 377 bits (927), Expect = e-104
Identities = 164/226 (72%), Positives = 203/226 (89%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 377 bits (927), Expect = e-104
Identities = 164/226 (72%), Positives = 203/226 (89%)
Frame = +1
Query: 91 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 270
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 271 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 450
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 451 KSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTA 630
S+ PRV+PVTSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA
Sbjct: 121 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA 180
Query: 631 GVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEAKP 768
GV+FEYDPDN +R T+YPKP+EWPKSE++EL+ED+ +A ++ KP
Sbjct: 181 GVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGKP 226
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 98.7 bits (235), Expect = 2e-20
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 223 AKFSPVATASYRLLPD 238
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 98.7 bits (235), Expect = 2e-20
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 43 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 102
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 103 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 154
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 155 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 214
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 215 AKFSPVATASYRLLPD 230
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 98.7 bits (235), Expect = 2e-20
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 223 AKFSPVATASYRLLPD 238
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 98.7 bits (235), Expect = 2e-20
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 223 AKFSPVATASYRLLPD 238
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 98.7 bits (235), Expect = 2e-20
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 295 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVV 474
GLIP+ +D + + R D + +++F L V+CT + H A SSDP +
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT--RNPH---AAKDSSDPNEL 162
Query: 475 ----PVTSRHRD----EDQAD-YGEA------DEILIIKLRKGQELKLRAYAKKGFGKEH 609
V +RH +QAD + E D+ILI +LR GQE+ L + KG GK+H
Sbjct: 163 YVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDH 222
Query: 610 AKWNPTAGVSFEYDPD 657
AK++P A S+ PD
Sbjct: 223 AKFSPVATASYRLLPD 238
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 63.7 bits (148), Expect = 7e-10
Identities = 25/68 (36%), Positives = 48/68 (70%)
Frame = +1
Query: 115 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 294
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 50 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 109
Query: 295 GLIPLISD 318
GLIP+ +D
Sbjct: 110 GLIPIHAD 117
>AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein.
Length = 200
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +1
Query: 526 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 657
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 110
>AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein.
Length = 168
Score = 33.1 bits (72), Expect = 1.1
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 526 DEILIIKLRKGQELKLRAYAKKGFGKEHAK 615
D+ILI +LR GQE+ L + KG GK+ A+
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKKVAR 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,474,374
Number of Sequences: 237096
Number of extensions: 2237451
Number of successful extensions: 12234
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12227
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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