Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A24
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 28 1.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.0
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 27 3.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 6.9
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 6.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 9.1
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 25 9.1
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.1
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 624 LWDTAWEGMVLXFLL*GILVSTSQ*ALCSYL*SKCLSMGSES 749
+WD V+ F+ GI+ S +C L +C++ SES
Sbjct: 235 IWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSES 276
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 272 FSIYLPPQAEGGDVKLPLLYY 334
F+ Y+PP+ GGD+ +P +Y
Sbjct: 20 FNGYVPPEQNGGDIVVPKDFY 40
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 389 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 490
RY + G IV+ ++PR +K +GD +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 YSLKKSDKLSYFHVSYQ-FKILILFNFRRRQTEISAVVNSGYKIIVNIIFPEAHQKSNMD 181
+SLK+++K S++H SY F + +++ + N+ + ++ ++
Sbjct: 775 FSLKETNKTSFWHSSYNLFNRQYHVDMPDNVSDLPQTRLCYGACVYNVGLLDEEKRKDLA 834
Query: 182 SLQLESSNKIFGGYQKVYSHASSELK 259
+ L SS K+ G +H SS K
Sbjct: 835 NSDLNSSPKLIQGNDSRSAHESSANK 860
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 492 ALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMKFCSLQVRP 340
A TP +SS TP +S ++TP S+A L+ P + + + V+P
Sbjct: 669 ASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQP 719
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 209 IFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKSGFQ 388
IF Y +YS AS + S Y P + GG + +LY L+ + F+
Sbjct: 564 IFTSYVLIYSFASIRIS-----SFYSPAKVWGGAFLVYILYSLAHVWVVAYEFVPGGPIL 618
Query: 389 RYAAEHGVIVVG 424
R + +I +G
Sbjct: 619 RERTSYILIFIG 630
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 368 ITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWD--FGVSAGFYLDATNEPWNNNYR 541
I+ SGF++Y + PD P V + + WD F VS G + + + R
Sbjct: 308 ISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIR 367
Query: 542 MGSYLN 559
G+++N
Sbjct: 368 GGTHVN 373
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 413 IVVGPDTSPRGVKIDGDDSSWDFGVSA 493
+++ S R + I G+D+ W G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 588 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 457
A + K+Y + K L PIL LF+GS+ +SK K LT + P
Sbjct: 98 ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,087
Number of Sequences: 5004
Number of extensions: 70449
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -