Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A24
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical ... 165 4e-41
AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical... 165 4e-41
Z49131-5|CAA88978.1| 217|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z81592-5|CAB04727.1| 434|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 28 6.4
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 28 6.4
Z36752-1|CAA85323.2| 150|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 28 6.4
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 28 6.4
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 28 6.4
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 28 6.4
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 28 6.4
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 28 8.5
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 28 8.5
>AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 165 bits (400), Expect = 4e-41
Identities = 81/171 (47%), Positives = 109/171 (63%)
Frame = +2
Query: 191 LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFI 370
L SSN+ F G Q VY HASS +C+M F +Y+P D KLP L+YLSGLTC+ NF+
Sbjct: 5 LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANFM 62
Query: 371 TKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGS 550
KSGFQ++A++H ++VV PDTSPRGV +DGD SWDFG AGFY++AT E W NYRM
Sbjct: 63 EKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYD 122
Query: 551 YLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALXSTLRNPGQYKSVSA 703
Y+ EL + ++ + +D + AL LRN +++S+SA
Sbjct: 123 YIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISA 172
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 703 FAPICNPSACPWGVKAFXGYLGE 771
FAPICNP PWG KA GYLG+
Sbjct: 173 FAPICNPITVPWGQKALTGYLGD 195
>AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 165 bits (400), Expect = 4e-41
Identities = 81/171 (47%), Positives = 109/171 (63%)
Frame = +2
Query: 191 LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFI 370
L SSN+ F G Q VY HASS +C+M F +Y+P D KLP L+YLSGLTC+ NF+
Sbjct: 5 LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANFM 62
Query: 371 TKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGS 550
KSGFQ++A++H ++VV PDTSPRGV +DGD SWDFG AGFY++AT E W NYRM
Sbjct: 63 EKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYD 122
Query: 551 YLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALXSTLRNPGQYKSVSA 703
Y+ EL + ++ + +D + AL LRN +++S+SA
Sbjct: 123 YIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISA 172
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 703 FAPICNPSACPWGVKAFXGYLGE 771
FAPICNP PWG KA GYLG+
Sbjct: 173 FAPICNPITVPWGQKALTGYLGD 195
>Z49131-5|CAA88978.1| 217|Caenorhabditis elegans Hypothetical
protein ZC373.6 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 440 RGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLNVELYDLILKAFCNVVDPNR 616
+G+ I G + +S G+ +T +P+N N+ V++ D + F V+ P R
Sbjct: 159 QGLDIHGGSGGYHRALSGGYLPPSTYDPYNVNWHSYGDEGVKMKDKAISVFRRVIAPGR 217
>Z81592-5|CAB04727.1| 434|Caenorhabditis elegans Hypothetical
protein T16G1.5 protein.
Length = 434
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 177 WTACN*NRPIKFLVVIKKCILMHHL 251
WT N N P K ++ + CI +HHL
Sbjct: 65 WTIPNENLPEKIILKLTSCINVHHL 89
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846
>Z36752-1|CAA85323.2| 150|Caenorhabditis elegans Hypothetical
protein F35H8.1 protein.
Length = 150
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +2
Query: 332 YLSGLTCSEQNFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDA 511
YLS L C FI G +R A E +++ + + + +D ++ F VS F D
Sbjct: 3 YLSNLLCLTLTFIVCFGAERDADEEAYVLM--NLLKQSIDMDQTEALPGF-VSRDFTYDT 59
Query: 512 TNEPWNNNYRMGSYLNV 562
WN + M YL V
Sbjct: 60 CKGIWNRDKYM-EYLKV 75
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 661 HLLECPHNCPTNIYSLMVECWHENIER 687
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 794 HLLECPHNCPTNIYSLMVECWHENIER 820
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 572 HIIQHSNNCPFCNYYSMVHLWHLNKNR 492
H+++ +NCP Y MV WH N R
Sbjct: 820 HLLECPHNCPTNIYSLMVECWHENIER 846
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 85 SQADGN*CRGK*WLQDNCEYNFSGGSSEIKH-GQLAIRIVQ*NFWWLS-KSVFS 240
S +D C + + DN + +SGG+ E+ H +L IV + +WL K FS
Sbjct: 85 SDSDIPGCSNQAMISDNWKPEYSGGTQELAHPDELPQTIVNDDDFWLKPKDFFS 138
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 85 SQADGN*CRGK*WLQDNCEYNFSGGSSEIKH-GQLAIRIVQ*NFWWLS-KSVFS 240
S +D C + + DN + +SGG+ E+ H +L IV + +WL K FS
Sbjct: 126 SDSDIPGCSNQAMISDNWKPEYSGGTQELAHPDELPQTIVNDDDFWLKPKDFFS 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,981
Number of Sequences: 27780
Number of extensions: 397369
Number of successful extensions: 918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -