Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A23
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    27   1.1  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   2.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   7.6  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 130 FHVYIHDYSFKCNVFQRS*FFYLKKH 53
           F ++ H YS++CN      +FYL KH
Sbjct: 236 FSLFAHHYSYRCNT-----WFYLSKH 256


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 220 QDC*ALCRYSIPFAVILHISNTSLLTSKF 306
           QD   L  Y IPF +I HI NT     +F
Sbjct: 55  QDAMDLLFYEIPFLLIKHIENTEEAKLRF 83


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 311 TINFEVNNEVFDM*RITANGMEYLHRAQQSCMVIKAHADLLI 186
           T+N E N +VF +     +  EYL+  +++ + +  HA+L +
Sbjct: 396 TVNAEKNGDVFFLYFYDDDSAEYLNIIRKTGIQLLGHANLYL 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,666
Number of Sequences: 5004
Number of extensions: 28020
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)