Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_A23
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269...    28   3.3  
01_06_0328 + 28507942-28508610,28509669-28510826                       28   3.3  
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524           27   7.5  

>01_06_0332 +
           28522797-28523536,28525035-28525067,28525956-28526942,
           28527153-28527282
          Length = 629

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 287 EVFDM*RITANGMEYLHRAQQSCMV---IKAHADLLIPLCICPQHVDF 153
           ++FD+    A G+EYLHR   + +V   IK H ++L+    CP+  DF
Sbjct: 398 KLFDVAVGIARGLEYLHRGCSTRIVHFDIKPH-NILLDQEFCPKISDF 444


>01_06_0328 + 28507942-28508610,28509669-28510826
          Length = 608

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 287 EVFDM*RITANGMEYLHRAQQSCMV---IKAHADLLIPLCICPQHVDF 153
           ++FD+    A G+EYLHR   + +V   IK H ++L+    CP+  DF
Sbjct: 419 KLFDVVVGIARGLEYLHRGCNTRIVHFDIKPH-NILLDQEFCPKISDF 465


>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
          Length = 427

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 207 STCRSSNPTLYMP 169
           S+CRSS PTLY P
Sbjct: 213 SSCRSSGPTLYFP 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,394
Number of Sequences: 37544
Number of extensions: 141480
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)