Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_A16
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 310 9e-86
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 231 8e-62
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 132 5e-32
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 101 9e-23
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 6e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 2e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 2e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 38 0.001
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.001
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.003
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 36 0.004
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.026
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.080
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 32 0.080
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.14
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.14
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.18
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 30 0.24
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 0.56
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.3
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.1
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 9.1
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 310 bits (762), Expect = 9e-86
Identities = 144/159 (90%), Positives = 151/159 (94%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRH 180
L VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE VEY+NISFTVWDVGGQDKIRPLWRH
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRH 80
Query: 181 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 360
YFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAAEIT
Sbjct: 81 YFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEIT 140
Query: 361 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 477
DKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 141 DKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 231 bits (564), Expect = 8e-62
Identities = 107/158 (67%), Positives = 125/158 (79%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRH 180
L +GLDAAGKTTILYKLKL + V TIPT+GFNVE V YKNI F VWDVGGQDKIRPLWRH
Sbjct: 25 LMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRH 84
Query: 181 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 360
YF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A+IT
Sbjct: 85 YFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQIT 144
Query: 361 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 474
D L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 145 DVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 132 bits (318), Expect = 5e-32
Identities = 63/159 (39%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWR 177
L +GLD AGKTTIL K L E V + PT GF + +E + + FT+WD+GGQ +R W+
Sbjct: 20 LLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWK 78
Query: 178 HYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEI 357
+YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A+++ EI
Sbjct: 79 NYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEI 138
Query: 358 TDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 474
+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 139 SKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 101 bits (242), Expect = 9e-23
Identities = 50/126 (39%), Positives = 74/126 (58%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRH 180
L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R LWR
Sbjct: 24 LFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRD 83
Query: 181 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 360
YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++ E+
Sbjct: 84 YFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELK 143
Query: 361 DKLGLH 378
LGL+
Sbjct: 144 AALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 45.6 bits (103), Expect = 6e-06
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVEX----VEYKNISFTVWDVGGQDKIR 165
L +G GK+ +L + + I TIG + + +E K + +WD GQ++ R
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 166 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 330
+ Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 1 LXVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVEXVEY--KNISFTVWDVGGQDKIR 165
L +G GK+ +L + + I TIG F + +E K I +WD GQ++ R
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 72
Query: 166 PLWRHYFQNTQGLIFVVDSNDRERIGEAR 252
+ Y++ G++ + D D++ R
Sbjct: 73 TITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 109 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 288
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 289 RDAVLLIFANKQDLPN 336
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVEX----VEYKNISFTVWDVGGQDKIRPL 171
+G GK+ +L + E + + TIG ++ K I +WD GQ++ R +
Sbjct: 16 IGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAI 75
Query: 172 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 330
Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 76 TSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 82 TIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 255
T+G + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 256 ELMRMLSEDELRDAVL 303
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VEXVEYKNISFTVWDVGGQDKIRPL 171
+G + GKT+++ + + T TIG + +E + + +WD GQ++ R L
Sbjct: 17 LGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 76
Query: 172 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 330
Y +++ I V D + E+ + + + D ++++ NK DL
Sbjct: 77 IPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNKTDL 128
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +1
Query: 109 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 288
E ++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAP 118
Query: 289 RDAVLLIFANKQDLPNAMNAAEITD 363
V+ + NK DL A E D
Sbjct: 119 EGIVIALAGNKLDLAQERRAVEKAD 143
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.7 bits (81), Expect = 0.003
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Frame = +1
Query: 76 IPTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 225
I T G + E + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 226 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL-PNAMNAAEITDKL-GLHSLRNRNW 399
++ EA + + ++ +++F NK DL ++ + I + +
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPT 338
Query: 400 YIQATCATSGDGLYEGLDWLSNQLKNANR 486
++Q C + + + G+ + + ++ NR
Sbjct: 339 FVQTQCPLADNAVRSGMYYFYLKFESLNR 367
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVEXVEYKN----ISFTVWDVGGQDKIRPL 171
VG GKTT + + GE I T+G V + + I F VWD GQ+K+ L
Sbjct: 15 VGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGL 74
Query: 172 WRHYFQNTQGLIFVVDSNDR 231
Y+ Q I + D R
Sbjct: 75 RDGYYIQGQCGIIMFDVTSR 94
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.026
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVEX---VEYKNISFTVWDVGGQDKIRPLW 174
VG A GKT++L LG T +PT+ N V+ K++ +WD GQ++ L
Sbjct: 14 VGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLR 73
Query: 175 RHYFQNTQGLI--FVVDSND 228
+ ++ F +DS D
Sbjct: 74 PMSYAKAHIILVGFAIDSPD 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.080
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 106 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 276
V+ K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
Query: 277 EDELRDAVLLIFANKQDL 330
++ NK D+
Sbjct: 112 PSNPETFPFILLGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.9 bits (69), Expect = 0.080
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--EXVEYKN--ISFTVWDVGGQDKIRPL 171
+G + GKT+++ G + T+G N + + +N I+F++WD+GGQ + +
Sbjct: 16 IGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNM 75
Query: 172 WRHYFQNTQGLIFVVDSNDRERIGEARE 255
+ ++F+ D + + + +E
Sbjct: 76 LPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 118 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 234
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VEXVEY--KNISFTVWDVGGQ---DKIR 165
VG A GKT +L G +PT+ N V VE ++I +WD GQ D++R
Sbjct: 12 VGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLR 71
Query: 166 PL 171
PL
Sbjct: 72 PL 73
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.18
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 106 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 276
V+ K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
Query: 277 EDE 285
+DE
Sbjct: 112 QDE 114
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.3 bits (65), Expect = 0.24
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVEX---VEYKNISFTVWDVGGQDKIRPLW 174
+G AAGKT++L G PTI N V+ +I ++WD GQ++ L
Sbjct: 19 LGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLR 78
Query: 175 RHYFQNTQGLI--FVVDSND 228
+ +T ++ F VDS D
Sbjct: 79 SLSYSDTHVIMICFAVDSRD 98
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.56
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +1
Query: 217 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 375
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 376 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLAXKS 519
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.3
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Frame = +1
Query: 7 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVEXVEYKNISFTVWDVGGQDKIRPLWRHYF 186
+G +GKT++ +L E TT+P+I N E V +K ++ V D+ G + + F
Sbjct: 43 IGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRAKRWITTKF 99
Query: 187 Q---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQDLPNAMNAA 351
N + ++FV++S +R + E L + + LLI NK DL A A
Sbjct: 100 SGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFDLFTAQPAE 159
Query: 352 EITD--KLGLHS-LRNRNWYIQATCATSGD 432
+I K LH+ L +N +++ + D
Sbjct: 160 KIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 177 PPQWSDFVLASNIPHSKTNVFVFY 106
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 226 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 393
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 394 N 396
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 446 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 312
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 64 IVTTIPTIGFNVEXVEYKNISFTVW 138
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 427 GDGLYEGLDWLSNQLKNAN 483
GD E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -2
Query: 170 SGLILSWPPTSHTV-KLMFL 114
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 214 VDSNDRERIGEAREELMRMLSEDE 285
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 172 WRHYFQNTQGLIFVVDSNDRERI 240
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,547
Number of Sequences: 5004
Number of extensions: 52287
Number of successful extensions: 184
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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